PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G28650.1
Common NameATWRKY74, F4I4.30, WRKY74
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 330aa    MW: 36494.8 Da    PI: 10.0755
Description WRKY DNA-binding protein 74
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G28650.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.7e-31263320359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+++++++tYegeHnh+
  AT5G28650.1 263 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVEETSMLIVTYEGEHNHS 320
                  9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-15222259IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.8E-33249320IPR003657WRKY domain
PROSITE profilePS5081129.471256322IPR003657WRKY domain
SuperFamilySSF1182902.09E-26259320IPR003657WRKY domain
SMARTSM007747.8E-37261321IPR003657WRKY domain
PfamPF031062.8E-26263319IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000191anatomysynergid
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEEVEAANKA AVESCHGVLN LLSQQTNDSK SIMVETREAV CKFKRVSSLL SRGLGQRKIK  60
KLNNNNYKFS SSLLPQHMFL ESPVCSNNAI SGCIPILAPK PLQIVPAGPP PLMLFNQNMC  120
LDKSFLELKP PSSRAVDPKP YQFIHTHQQG VYSRSKSGLN LKFDGSIGAS CYSPSISNGS  180
RSFVSSLSMD GSVTDYDRNS FHLIGLPQGS DHISQHSRRT SCSGSLKCGS KSKCHCSKKR  240
KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE  300
RCVEETSMLI VTYEGEHNHS RILSSQSAHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20254320772WRKY transcription factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425681190.0
Genevisible246104_at0.0
Expression AtlasAT5G28650-
AtGenExpressAT5G28650-
ATTED-IIAT5G28650-
Functional Description ? help Back to Top
Source Description
TAIRmember of WRKY Transcription Factor; Group II-d
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G28650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G28650
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423980.0AF442398.1 Arabidopsis thaliana WRKY transcription factor 74 (WRKY74) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198217.10.0WRKY DNA-binding protein 74
SwissprotQ93WU60.0WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A178UCL60.0A0A178UCL6_ARATH; WRKY74
STRINGAT5G28650.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Representative plantOGRP18171541
Publications ? help Back to Top
  1. Eulgem T,Rushton PJ,Robatzek S,Somssich IE
    The WRKY superfamily of plant transcription factors.
    Trends Plant Sci., 2000. 5(5): p. 199-206
    [PMID:10785665]
  2. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  3. Park CY, et al.
    WRKY group IId transcription factors interact with calmodulin.
    FEBS Lett., 2005. 579(6): p. 1545-50
    [PMID:15733871]
  4. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  5. Journot-Catalino N,Somssich IE,Roby D,Kroj T
    The transcription factors WRKY11 and WRKY17 act as negative regulators of basal resistance in Arabidopsis thaliana.
    Plant Cell, 2006. 18(11): p. 3289-302
    [PMID:17114354]
  6. Wuest SE, et al.
    Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes.
    Curr. Biol., 2010. 20(6): p. 506-12
    [PMID:20226671]