PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00015.1.g00720.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 350aa    MW: 37377.3 Da    PI: 10.4864
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00015.1.g00720.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.7e-31284341359
                                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh 
  Zpz_sc00015.1.g00720.1.sm.mkhc 284 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPTMLIVTYEGEHNHA 341
                                     9*************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.2E-17235280IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.6E-34270343IPR003657WRKY domain
PROSITE profilePS5081131.491277343IPR003657WRKY domain
SuperFamilySSF1182901.83E-27280343IPR003657WRKY domain
SMARTSM007744.8E-38282342IPR003657WRKY domain
PfamPF031064.3E-27284340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEAVEVANRA AVESCHRVLA LLSQSEQQDP ALRRSVASET GEACAKLRKV VALLGDTSGS  60
GHARGRFSRR GGPTGFLSQK GFLGSGGGAS LETTPSGSAT APSNSYAQLR ARINAASEYS  120
RGLDVASTSG SPHFGAPKLV QPLSVQFQIG PFPQQPSARQ KLQAEMFKRS NSGISVKFDS  180
PCPSGATATM TSSARSFMSS LSMDGSVVSL EGKRPFHLVG ALAASDPVDV QLEPKRRCVG  240
KGEDGRGKCA VTGRCHCSKR RKLRNKRSIK VPAISNKIAD IPPDEYSWRK YGQKPIKGSP  300
HPRGYYKCSS VRGCPARKHV ERCVDDPTML IVTYEGEHNH ARPPAQSAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22270345276WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00015.1.g00720.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809630.10.0protein WRKY1-like isoform X1
TrEMBLA0A2T7EIW20.0A0A2T7EIW2_9POAL; Uncharacterized protein
STRINGPavir.J38176.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.16e-73WRKY DNA-binding protein 39