PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00015.1.g00520.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 662aa    MW: 75799.1 Da    PI: 8.2111
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00015.1.g00520.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.4e-1628117199
                                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                   ffk +     ++++ +++p kf++++++  ee   + l+ +sg++W++ l  +k++++ +l +GW +F ka++L+e+D +v
  Zpz_sc00015.1.g00520.1.am.mk  28 FFKLM--TGDFAKC-ISIPEKFVSNFKIT-EE--AVDLKVTSGETWRIIL--EKRDNELYLMSGWMDFSKAQELRENDLLV 100
                                   56666..5566677.9*******666655.44..599999**********..***************************** PP

                                   EEE-SS.SEE..EEEEE-S CS
                            B3  82 Fkldgr.sefelvvkvfrk 99 
                                   F+ +++ s+f   v+vf++
  Zpz_sc00015.1.g00520.1.am.mk 101 FTCSNErSSF--DVQVFEE 117
                                   **88655777..9998875 PP
2B351.51.9e-163544351499
                                   T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                            B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                   +rl++p kf ++  ++ + +k  +l+ +sg+ W v +  +k++++  +t+GW +F+ a+gL+e+D +vF+++g+++f   v
  Zpz_sc00015.1.g00520.1.am.mk 354 QRLIIPQKFGNALTLNANATKRFSLKAPSGEPWIVGV--TKHGDELCFTSGWGDFAVAHGLQENDLLVFTRSGKRSF--DV 430
                                   57********99999999999****************..*******************************8877777..89 PP

                                   EEE-S CS
                            B3  95 kvfrk 99 
                                   +vf++
  Zpz_sc00015.1.g00520.1.am.mk 431 MVFDA 435
                                   99886 PP
3B332.51.5e-105686531899
                                   --HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..E CS
                            B3  18 lpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelv 93 
                                   l k+++++ ++   +s ++ l    ++ ++W v++ y +++ r +  + W +Fv++n+L+  D++vF+l+  g  +++++v
  Zpz_sc00015.1.g00520.1.am.mk 568 LQKSHMNRKNNRLMRSHEVLLLRpgRKEQKWHVRY-YHGSGTRGFGCRRWVKFVRDNRLRRDDVCVFELVkkGGaRRTTMV 647
                                   55666655543444556666666235569******.6666666666679*******************8744455777888 PP

                                   EEEE-S CS
                            B3  94 vkvfrk 99 
                                   v+v+rk
  Zpz_sc00015.1.g00520.1.am.mk 648 VHVVRK 653
                                   888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-1621120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.40725118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-1625120IPR015300DNA-binding pseudobarrel domain
CDDcd100174.76E-1727115No hitNo description
SMARTSM010194.1E-1128118IPR003340B3 DNA binding domain
PfamPF023621.8E-1228116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-12225306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-11225306IPR015300DNA-binding pseudobarrel domain
CDDcd100174.43E-9228306No hitNo description
SMARTSM010190.068230314IPR003340B3 DNA binding domain
PROSITE profilePS508636.499231306IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-19339438IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-18339438IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.211341436IPR003340B3 DNA binding domain
CDDcd100172.67E-14343434No hitNo description
SMARTSM010194.1E-9344436IPR003340B3 DNA binding domain
PfamPF023623.0E-13353435IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-14557653IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-11557652IPR015300DNA-binding pseudobarrel domain
CDDcd100179.87E-12562652No hitNo description
SMARTSM010197.1E-5564654IPR003340B3 DNA binding domain
PfamPF023625.5E-8582653IPR003340B3 DNA binding domain
PROSITE profilePS508639.883585654IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MVEKGCERCR EWQEHYYRKH MDVSKMSFFK LMTGDFAKCI SIPEKFVSNF KITEEAVDLK  60
VTSGETWRII LEKRDNELYL MSGWMDFSKA QELRENDLLV FTCSNERSSF DVQVFEESGC  120
VKTPSLFGPN MCRHFSETAG RRAEHYSLSD SDDSTMPSQL VGCPRDAWRE PDSPNSSSCH  180
VKHEAVEEEE SDDMYADSKY YYSRFANQLT NDEKEEVLGL APIGRDNPVF VTVLQKSHCQ  240
RRNNSMTIPS GLAADHLEAR SQDIILRRPH RKESWTVRYY YTSSHRCIQN LQFFNFVREN  300
KLREGDDDRP CRQEEGPGPM DRQGCASCQK WRDHRSQDAS RTRFIKFMAR DFAQRLIIPQ  360
KFGNALTLNA NATKRFSLKA PSGEPWIVGV TKHGDELCFT SGWGDFAVAH GLQENDLLVF  420
TRSGKRSFDV MVFDASGCEK VSSFFMLGEG DPCRREGFGG VKMGGQRAEH CGLSDSDDDA  480
GTPLRLVESA RKASASKKKS TAGRTNPGEE STESPDSSHE EEQSDDRRAG SNCYYYSRSA  540
SVLTEDEREE ALSLVSIRPG NPAFVTVLQK SHMNRKNNRL MRSHEVLLLR PGRKEQKWHV  600
RYYHGSGTRG FGCRRWVKFV RDNRLRRDDV CVFELVKKGG ARRTTMVVHV VRKRNGRLVL  660
LG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00015.1.g00520.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808343.11e-128B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-95Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-24B3 family protein