PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00013.1.g00320.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 235aa MW: 24708.7 Da PI: 8.2297 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 84.6 | 1.1e-26 | 16 | 66 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +Y+eC++NhAa+lG++a DGC+E++p+ ++++aa+ CaACgCHRnFHR+ Zpz_sc00013.1.g00320.1.am.mk 16 EVYRECMRNHAAKLGTYASDGCCEYTPD---DAHPAAMLCAACGCHRNFHRKAF 66 68*************************8...678*****************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 9.8E-22 | 17 | 65 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-20 | 18 | 64 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.0E-20 | 18 | 64 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 21.953 | 18 | 65 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.91E-16 | 105 | 179 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-27 | 106 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 9.0E-28 | 118 | 179 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 0.00611 | 118 | 178 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEQQQPQQQQ QERPREVYRE CMRNHAAKLG TYASDGCCEY TPDDAHPAAM LCAACGCHRN 60 FHRKAFLDAV SGATGAASPH APPMLPSPGP APAGYGMHMA LAASAGMGGG AHGSASRRRT 120 RTKFTEEQKE RMLQFAERLG WRMPKREPGR VPGDDEVARF CREIGVTRQV FKVWMHNHKV 180 GGGSGGGASA AGVGGAAQTS SSTTRGGGGA AGGGGSMSPA MGEDDEEVRG SEMCM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 4e-19 | 117 | 186 | 17 | 80 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00013.1.g00320.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF369906 | 2e-74 | AF369906.1 Sorghum bicolor clone BAC10J22 Sbb3766 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466561.1 | 4e-99 | zinc-finger homeodomain protein 11 | ||||
Refseq | XP_020168474.1 | 4e-99 | zinc-finger homeodomain protein 11-like | ||||
Swissprot | A2XLF4 | 4e-92 | ZHD11_ORYSI; Zinc-finger homeodomain protein 11 | ||||
Swissprot | Q10DV5 | 4e-92 | ZHD11_ORYSJ; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A3B6U085 | 1e-100 | A0A3B6U085_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4AL_5659286D11.1 | 1e-100 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9204 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-33 | homeobox protein 22 |