PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00004.1.g01190.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 369aa MW: 39891.1 Da PI: 8.4529 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.2 | 3.8e-54 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdeel+v+yL++++ ++++++ +i++vdiyk++PwdLp+k++ ++kewyfFs+rd+ky++g r+nra+ Zpz_sc00004.1.g01190.1.sm.mkhc 9 LPPGFRFHPTDEELIVHYLRNRAGSSPIPV-AIIADVDIYKFNPWDLPSKAAYGDKEWYFFSPRDRKYPNGIRPNRAAG 86 79****************************.88***************888889************************* PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatg+dk+++s+ +ge vg+kk Lvfykgr pkg+kt+W+mheyrl Zpz_sc00004.1.g01190.1.sm.mkhc 87 SGYWKATGTDKPIHSTtTGESVGVKKALVFYKGRPPKGTKTNWIMHEYRL 136 **************9978999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-65 | 3 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.609 | 9 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-27 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MIMANTAMLP PGFRFHPTDE ELIVHYLRNR AGSSPIPVAI IADVDIYKFN PWDLPSKAAY 60 GDKEWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH STTTGESVGV KKALVFYKGR 120 PPKGTKTNWI MHEYRLAADA NAGHAYRPMK FRNASMRLDD WVLCRIYMKT SHAASPMAVP 180 PLFDHEQDEP CGFDETSYAT SSAGMILPGA AAGAFPMQQD AAAGTQTMPR ILSISELLND 240 YPLAPFFDDG GVQDTARLDQ QHHHAALLGH PVASHLLVNN GDNSMSGQLL LANATATTSA 300 AGDGVTAGIK RKRSELESGA SALASHQAAA AKKPNGSCFG ATFQTGNGLQ GSLNQLGHQM 360 LLHPNMGMH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-73 | 9 | 173 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-73 | 9 | 173 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-73 | 9 | 173 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-73 | 9 | 173 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-73 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-73 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-73 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-73 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-73 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-73 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-73 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-73 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-73 | 9 | 173 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-73 | 9 | 173 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00004.1.g01190.1.sm.mkhc |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798103.1 | 0.0 | NAC domain-containing protein 10-like | ||||
Swissprot | Q8H4S4 | 1e-82 | NAC10_ORYSJ; NAC domain-containing protein 10 | ||||
TrEMBL | A0A3G2LN22 | 0.0 | A0A3G2LN22_9POAL; NAC transcription factor | ||||
STRING | Pavir.Ia03443.1.p | 1e-178 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 2e-82 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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