PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00004.1.g00700.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 323aa    MW: 34061.5 Da    PI: 5.6398
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00004.1.g00700.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.11.1e-25115176159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDg+ WrKYGqKe+++s++prsY+rCt++   gC +k++v+ +++dp+ +++tY geH+++
  Zpz_sc00004.1.g00700.1.sm.mkhc 115 LDDGHIWRKYGQKEIQNSPHPRSYFRCTHKsdqGCDAKRHVQLCETDPSKFVVTYYGEHTCR 176
                                     58***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-27112178IPR003657WRKY domain
SuperFamilySSF1182904.32E-25114178IPR003657WRKY domain
SMARTSM007742.1E-36115177IPR003657WRKY domain
PROSITE profilePS5081124.294115178IPR003657WRKY domain
PfamPF031065.2E-25116176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAWSGGDVPA ERATAAASDL VEAREGVERL KTFLLQLGDR RAPWAEEVAD GVLNCLNRLA  60
NATSALDVVA GGERPRAGSV GGRPQPAASS SRNTRNRSVP RRSQRALDQR ITASLDDGHI  120
WRKYGQKEIQ NSPHPRSYFR CTHKSDQGCD AKRHVQLCET DPSKFVVTYY GEHTCRDPAT  180
IPLVIHATAG SAPDGGGASN LISFAPSRAN AGSTGGASST QVLEMDGGAA TQLSTSWCTS  240
DDLFSSSAGS FMEVEYGLEA VVGSAAGVMS ARTVAGSAQD YSDIMHGRPP GDRGVGVAGN  300
FPSSPNSLGF EVADDDDFFR LDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-28111176469OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00004.1.g00700.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984468.11e-114probable WRKY transcription factor 70 isoform X2
TrEMBLK4ACH41e-113K4ACH4_SETIT; Uncharacterized protein
STRINGSi036565m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-22WRKY DNA-binding protein 46