PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00002.1.g01260.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CAMTA
Protein Properties Length: 487aa    MW: 54020.8 Da    PI: 5.9184
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00002.1.g01260.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-140.35.7e-132269350
                            CG-1  3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryf 50
                                    + ++rwl+++ei++iL n++ ++++ e+++rp sgsl+L++rk++r f
  Zpz_sc00002.1.g01260.1.sm.mkhc 22 EAQTRWLRPTEICEILFNYKLFSISPEPPNRPASGSLFLFDRKILRDF 69
                                    3499******************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143722.09416144IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-61981IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-112270IPR005559CG-1 DNA-binding domain
PROSITE profilePS500968.791419448IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MAEARKFVLP GQPPDFSQLQ VEAQTRWLRP TEICEILFNY KLFSISPEPP NRPASGSLFL  60
FDRKILRDFT HIVLVHYLEV KILKKPGKGY HVEMPSRTAN LDYHSFSHHD IAILFQDASI  120
GLGDDSRTPF DSVTFNETYT DYPNRFTKPT LHSSFATLEA SDLGDSSHMQ TFTSEALYTN  180
HLSQQEAEAL YTNHLSQKEV DALSFAGISS SEVNGNRYTD GIIKHPLLKQ SSLDLLKIDS  240
AGFGYWYILG EQRTCGKVER TVGILIANGA SAGALTDPTS EFPCGRSPAD LASANGHKGI  300
AGFLAEAALT SHLSALTIRE SKNNAVEVCG LPVADELNDT DYTQLAADDC HIDSLKDSLS  360
AVRKSTQAAA RIFQAFRVES FHRKKVVEYG DDDCGLSDEQ TLSLVSLKNV KPGQHDTHLH  420
SAAVRIQNKF RGWKGRKEFM IIRQRIVKLQ MLQDEMLNDA AGADGNDFMT GLEDLICRDD  480
AAMPAIW
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00002.1.g01260.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467764.11e-105calmodulin-binding transcription activator 3 isoform X2
RefseqXP_010228547.11e-105calmodulin-binding transcription activator 3 isoform X2
RefseqXP_021316757.11e-105calmodulin-binding transcription activator 3 isoform X1
RefseqXP_021316766.11e-105calmodulin-binding transcription activator 3 isoform X3
SwissprotQ9FY744e-50CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLA0A1B6QMV31e-104A0A1B6QMV3_SORBI; Uncharacterized protein
TrEMBLC5WXQ81e-104C5WXQ8_SORBI; Uncharacterized protein
TrEMBLI1H4X21e-104I1H4X2_BRADI; Uncharacterized protein
STRINGBRADI1G60817.21e-105(Brachypodium distachyon)
STRINGSb01g033650.11e-105(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.12e-52ethylene induced calmodulin binding protein