PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00001.1.g00710.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 656aa    MW: 69609.3 Da    PI: 5.8886
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00001.1.g00710.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS171.85.4e-532836231373
                          GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd......pmqRlaayfteALaarlarsvselykal...ppsets 70 
                                   l +lL+++Aea+s   ++ ela+ +L rl+e++s +g+      +m+Rlaa+ft AL+  l +s +  ++     ++ +++
  Zpz_sc00001.1.g00710.1.am.mk 283 LLHLLMAAAEALSGphKSWELARVILVRLKEMVSHTGStnaaasNMERLAAHFTDALQGLLDGSHPVGAAGRqtaAAHQQQ 363
                                   579**********8446667************9999966888889*****************9766544433101444444 PP

                          GRAS  71 eknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgs 149
                                   ++++ ++l+a++l++++sP++kf+h+taNqaIleav+g++rvHi+D+di +G        a+ sRp   +pp+lRiT++++
  Zpz_sc00001.1.g00710.1.am.mk 364 HNHTGDVLTAFQLLQDMSPYMKFGHFTANQAILEAVAGDRRVHIVDYDIAEG--------AMISRPdgVPPPHLRITALSR 436
                                   455999**********************************************........6889**767799********* PP

                          GRAS 150 pesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLkl 230
                                   +  g +++++e+g+rLa fA+++g pf+f++            + r+ +gE l+ n+vl+        ++++  + +++ +
  Zpz_sc00001.1.g00710.1.am.mk 437 SGGGGSRAVQEVGRRLAAFAASIGQPFSFRA-----------ATVRMVKGEILVANCVLNQAAAT---TTIRRSTGSLVTV 503
                                   7777**************************9...........3557789**********665554...5555557778888 PP

                          GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311
                                   v + + +     e+  d  ++ F++rf+e l+ ysa            s+ r  vEr++l+++i  +++ + ++       
  Zpz_sc00001.1.g00710.1.am.mk 504 VEEDQGDAEKEDEESGDAAAGGFVTRFMEELHRYSA------------SRVRGLVERVILAPNIAGALSRAYRA------- 565
                                   888888877777777788888*************97............688*******************9999....... PP

                          GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees.gslvlgWkdrpLvsvSaW 373
                                        + ++ea  +pv ls ++ +qa+lll  ++ dgy++ee s + +vlgWk ++L+s+S+W
  Zpz_sc00001.1.g00710.1.am.mk 566 ----VDGVDEAKGGPVVLSCFNHSQARLLLGLFN-DGYTMEETSpNKIVLGWKAQRLLSASVW 623
                                   ....4567778889********************.******88626777************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.082257656IPR005202Transcription factor GRAS
PfamPF035141.9E-50283623IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MTFAHQPHGP HQAAMDSAAL FCDPDHRNDC VPPRRLEDQA LASAESAHAL CLAANHYAAD  60
GDCDGSVRPA GAFCCLLVAE RTHVANVGQA RPHSPLALPL RELAMHRTEP HVSSGPTRSL  120
LPPHRSIPPV PYAPKHFRVP NQSRVTTHKY EDGTQPSAMD VTMDDVAGEL EFSGCSSTTS  180
SSPSCSLDAG TAMYCSWNGL APVADWAPFC SDDGGQDLHG LIESMLCDDT LDDHAGLHPA  240
MFLDEACCYS NGSGPSSTTT TNPGTPVHDV DAQGDCPEMG LRLLHLLMAA AEALSGPHKS  300
WELARVILVR LKEMVSHTGS TNAAASNMER LAAHFTDALQ GLLDGSHPVG AAGRQTAAAH  360
QQQHNHTGDV LTAFQLLQDM SPYMKFGHFT ANQAILEAVA GDRRVHIVDY DIAEGAMISR  420
PDGVPPPHLR ITALSRSGGG GSRAVQEVGR RLAAFAASIG QPFSFRAATV RMVKGEILVA  480
NCVLNQAAAT TTIRRSTGSL VTVVEEDQGD AEKEDEESGD AAAGGFVTRF MEELHRYSAS  540
RVRGLVERVI LAPNIAGALS RAYRAVDGVD EAKGGPVVLS CFNHSQARLL LGLFNDGYTM  600
EETSPNKIVL GWKAQRLLSA SVWAPPPMSV PPSPPEGVLQ SVGMAPVSVE PAYAIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-3129162526379Protein SCARECROW
5b3h_D6e-3129162526379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00001.1.g00710.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468140.20.0nodulation-signaling pathway 2 protein
TrEMBLA0A1E5V8410.0A0A1E5V841_9POAL; Nodulation-signaling pathway 2 protein
STRINGGRMZM2G055263_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-66GRAS family protein