PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc09819.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 287aa    MW: 30108.2 Da    PI: 7.9801
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc09819.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.32.9e-32109162255
                       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Zmw_sc09819.1.g00010.1.am.mk 109 PRMRWTTALHARFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 162
                                   9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.09E-16107163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-29107163IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-24109162IPR006447Myb domain, plants
PfamPF002493.8E-8110161IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MLRRNLPNLS LQISPPASSS DASTVAKPAP VEASTATYDD EGSGEVWLVF ANPSPSVEPP  60
DLSLELGTAA RTDDAGRRSH LLQPHHGCAF KRAAERPSVP GLKRSARAPR MRWTTALHAR  120
FVHAVELLGG HERATPKSVL ELMNVKDLTL AHVKSHLQMY RTVKSTDRSS HVTTGEALLE  180
QQRTATGMME VAVEAAAAAA EGGGRGVAAV LQRCDDMVGI CGPPAAAAAA ASAATTASAA  240
HFLCAPAPTP LMHPSSLFTC VYSSSRVGTN QGMHVPTLQS SAPEPFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-17110164458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-17110164458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-17110164458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-17110164458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-17110164458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-17110164458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-17110164458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-17110164458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466395.11e-82probable transcription factor GLK2
TrEMBLC5WZ983e-81C5WZ98_SORBI; Uncharacterized protein
STRINGSb01g007030.15e-82(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65543750