PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05003.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 488aa    MW: 51519.8 Da    PI: 8.0837
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05003.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.2e-33205263260
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                     +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d++v++i+Y+g Hnh+k
  Zmw_sc05003.1.g00040.1.sm.mkhc 205 EDGYNWRKYGQKQVKGSENPRSYYKCTYHSCSMKKKVERSLADGRVTQIVYKGAHNHPK 263
                                     8********************************************************85 PP
2WRKY103.89.2e-33362420159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDg++WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+ +d ++v++tYeg+Hnh+
  Zmw_sc05003.1.g00040.1.sm.mkhc 362 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTPGCPVRKHVERACHDSRAVITTYEGKHNHD 420
                                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.773199264IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-28201264IPR003657WRKY domain
SuperFamilySSF1182901.7E-25203264IPR003657WRKY domain
SMARTSM007741.3E-35204263IPR003657WRKY domain
PfamPF031061.5E-24205262IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-36347422IPR003657WRKY domain
SuperFamilySSF1182903.92E-29354422IPR003657WRKY domain
PROSITE profilePS5081137.792357422IPR003657WRKY domain
SMARTSM007744.3E-38362421IPR003657WRKY domain
PfamPF031062.4E-25363420IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MASSTGSLEH GGGGFTFTPP QFITSFTDLL SGAAGDMLSG ESPRSMFPRA GGNGGVPKFK  60
SAQPPRLPIS PPPMSPSSYF AIPAGLSPAE LLDSPVLLTS ASNFLASPTT GAIPAQGFYW  120
KQAADAIAAS QSQSQQESRA DAGFSDFSFF TAGPDAVPTA QTASFPSFTK AQQVEQSAAP  180
KVTVSSINKS GGGGGGDGGN KKQLEDGYNW RKYGQKQVKG SENPRSYYKC TYHSCSMKKK  240
VERSLADGRV TQIVYKGAHN HPKPLSTRRN SSSGGVGGAA DQDHHQQQAA PGTEHAVATP  300
ENSTVTFGDE DGCGSQRSDG DEPDAKRWKE DGENEGSSGG AGGKPVREPR LVVQTLSDID  360
ILDDGFRWRK YGQKVVKGNP NPRSYYKCTT PGCPVRKHVE RACHDSRAVI TTYEGKHNHD  420
VPVGRGAASA SRAPPAPAPT NHHQHPYTLE MLPTSSDAGY GAGGAFQQRA AVAKDEPRDD  480
LFVDSLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36204422177Probable WRKY transcription factor 4
2lex_A2e-36204422177Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807559.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-114WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1E5V1I90.0A0A1E5V1I9_9POAL; Putative WRKY transcription factor 26
STRINGSi021956m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]