PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04922.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family YABBY
Protein Properties Length: 287aa    MW: 30803.9 Da    PI: 8.8665
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04922.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY875e-27221536126
                         YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl..deslkee.....lleelkvee 79 
                                     eq+Cyv+Cn+C+tilav vP +slfk+v+vrCGhC++llsvnl+     l+a ++l  +++l  +     ll+++    
  Zmw_sc04922.1.g00060.1.sm.mk  22 EQEQLCYVHCNYCDTILAVGVPCSSLFKTVAVRCGHCANLLSVNLRSLL--LPAANQLpfGQALLSPtsphgLLDDMPPFA 100
                                   679***************************************9987655..455554411333333345568888888877 PP

                         YABBY  80 enlksnvekeesastsvsseklsenedeevprv......ppvirPPekrqrvP 126
                                     + s  ++e++as +vs+ + s+n+  ++  +      pp   PPe +q+ P
  Zmw_sc04922.1.g00060.1.sm.mk 101 APTPSLLSAEQAASPTVSTITSSNNSYGNSMSAmsinapPPKSAPPEPQQQQP 153
                                   77777777777777666666555544444333300000044566666666655 PP
2YABBY119.94.1e-3717424596170
                         YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                                    ++++    ++ ++p v+++ r  ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWahfP+ihfgl
  Zmw_sc04922.1.g00060.1.sm.mk 174 AQNFT---VDSSQLPTVKHAQRATEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGL 245
                                   23322...3345567777899****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.7E-6322245IPR006780YABBY protein
SuperFamilySSF470952.75E-7188238IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.4E-4197237IPR009071High mobility group box domain
CDDcd000849.43E-5199235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSSVPETFAT DQHLVQPPAA AEQEQLCYVH CNYCDTILAV GVPCSSLFKT VAVRCGHCAN  60
LLSVNLRSLL LPAANQLPFG QALLSPTSPH GLLDDMPPFA APTPSLLSAE QAASPTVSTI  120
TSSNNSYGNS MSAMSINAPP PKSAPPEPQQ QQPKSASSGN RKSFGWSRLK SQKAQNFTVD  180
SSQLPTVKHA QRATEKRQRV PSAYNRFIKD EIQRIKASNP DITHREAFSA AAKNWAHFPH  240
IHFGLMPDQG LKKTSIQNQD GSECMLFKGG LYAAAAAAAS GMSITPY
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976365.11e-122protein YABBY 5
SwissprotQ01JG21e-112YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-112YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A0A9NXW51e-123A0A0A9NXW5_ARUDO; ZYB14
STRINGSi010859m1e-121(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]