PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04244.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 336aa    MW: 37748.7 Da    PI: 5.9002
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04244.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-092612952155
                                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   + +yps++e+  LA+ +gL+++q+ +WF N+R ++
  Zmw_sc04244.1.g00110.1.sm.mk 261 RWPYPSETEKIALAEATGLDQKQINNWFINQRKRH 295
                                   679*****************************885 PP
2ELK41.13.7e-14215236122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELKh+Ll+KY+gyLg+L+qEFs
  Zmw_sc04244.1.g00110.1.sm.mk 215 ELKHHLLKKYGGYLGGLRQEFS 236
                                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-1982126IPR005540KNOX1
PfamPF037907.4E-2283124IPR005540KNOX1
SMARTSM012562.2E-27132183IPR005541KNOX2
PfamPF037912.3E-23138182IPR005541KNOX2
PROSITE profilePS5121311.505215235IPR005539ELK domain
PfamPF037899.6E-11215236IPR005539ELK domain
SMARTSM011881.5E-7215236IPR005539ELK domain
PROSITE profilePS5007113.151235298IPR001356Homeobox domain
SuperFamilySSF466897.27E-20236306IPR009057Homeodomain-like
SMARTSM003892.9E-12237302IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.7E-28240301IPR009057Homeodomain-like
CDDcd000862.04E-12247298No hitNo description
PfamPF059202.4E-16255294IPR008422Homeobox KN domain
PROSITE patternPS000270273296IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MERFAELGGG GSSSTFNASF LQLPLLAAAS AQAIPPKAQQ DRSRLALQQL PADLSSSVPT  60
VRHNHQKGGE VVMGEIAPAD AETVKAEIMS HPQYPALLTA YLDCQKVGAP PDVSDRLSAV  120
AAKVDTLQWK DQRRPQRANP ELDQFMEAYC NMLVKYQEEL ARPIQEAAEF FNSVEKQLDS  180
ITDSSTRDGA GSSDVDDDQD ASCPEELDPC AEDKELKHHL LKKYGGYLGG LRQEFSKRKK  240
KGKLPKEARQ KLLQWWELHY RWPYPSETEK IALAEATGLD QKQINNWFIN QRKRHWKPTS  300
EDMPPFAMVM EGCFHAPPAL YMDRPFMADG MYRLGP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795146.11e-158homeobox protein knotted-1-like 12 isoform X3
SwissprotO650341e-107KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-107KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A0A9GAR11e-176A0A0A9GAR1_ARUDO; Uncharacterized protein
STRINGPavir.Ia00428.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]