PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G135447_P01
Common NameLOC606458, Zm.29383
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 364aa    MW: 40276.3 Da    PI: 6.3232
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G135447_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.61.1e-092823172055
                        HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +k +yps++e+  LA+ +gL+ +q+ +WF N+R ++
  GRMZM2G135447_P01 282 YKWPYPSETEKMALAETTGLDPKQINNWFINQRKRH 317
                        4679*****************************885 PP

2ELK42.81e-14237258122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELKhqLlrKY+gyLg+L+qEFs
  GRMZM2G135447_P01 237 ELKHQLLRKYGGYLGGLRQEFS 258
                        9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-19100144IPR005540KNOX1
PfamPF037902.6E-21101141IPR005540KNOX1
SMARTSM012562.2E-24156207IPR005541KNOX2
PfamPF037912.2E-21161204IPR005541KNOX2
PROSITE profilePS5121311.575237257IPR005539ELK domain
SMARTSM011884.2E-8237258IPR005539ELK domain
PfamPF037893.9E-11237258IPR005539ELK domain
PROSITE profilePS5007113.005257320IPR001356Homeobox domain
SuperFamilySSF466891.24E-19258328IPR009057Homeodomain-like
SMARTSM003891.8E-12259324IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.9E-28262324IPR009057Homeodomain-like
CDDcd000861.35E-12269320No hitNo description
PfamPF059202.6E-16277316IPR008422Homeobox KN domain
PROSITE patternPS000270295318IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDSFGDLGGG GSSSSRAASA PFLQLPLPAS TSSAQQQVLF PLPDGPQQQH HHHSSRIPLR  60
QLLLLADPSS AAQHSASHRT KDMATVQGEM SSPAVDGDAD AIKARIMSHP QYSALLAAYL  120
DCQKVGAPPD VSDRLSAMAA ANLDAQPGPI SRRRGPTTTR ADDPELDQFM EAYCNMLVKF  180
HEEMARPIQE ATEFFNSMER QLGSTISDSN CEVAGSSEDE QDASWPEEID PCAEDKELKH  240
QLLRKYGGYL GGLRQEFSKR KKKGKLPKEA RQKLLHWWEL HYKWPYPSET EKMALAETTG  300
LDPKQINNWF INQRKRHWKP ASEDMPFAVM EGGFHVAQGT AALYMDRPAV PPFMADGGMY  360
RLGS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G135447
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the embryo at 4 days after pollination (DAP) in the ventral and basal part of the embryo including the initial of the shoot apical meristem (SAM). At 5 DAP, expressed at the ventral side of the embryo, but the expression within SAM is down-regulated. At 7 DAP, expression is restricted to the boundaries between the embryonic organs, between the scutellum and the coleoptile, the coleoptile and the second leaf primordium, the shoot apical meristem and the first leaf primordium, the first leaf primordium and the coleoptile, the coleoptile and the epiblast and at the tip of the epiblast, but not in the leaf primordia. {ECO:0000269|PubMed:10080693}.
UniprotDEVELOPMENTAL STAGE: Expressed in the embryo at 4 days after pollination (DAP) in the ventral and basal part of the embryo, including the initial of the shoot apical meristem (SAM). At 5 DAP, expressed at the ventral side of the embryo, but the expression within SAM is down-regulated. At 7 DAP, expression is restricted to the boundaries between the embryonic organs, between the scutellum and the coleoptile, the coleoptile and the second leaf primordium, the shoot apical meristem and the first leaf primordium, the first leaf primordium and the coleoptile, the coleoptile and the epiblast and at the tip of the epiblast, but not in the leaf primordia. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10095070, ECO:0000269|PubMed:9869405}.
UniprotTISSUE SPECIFICITY: Expressed in stems, rachis and inflorescence. {ECO:0000269|PubMed:9869405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBM25215497Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G135447_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0366810.0BT036681.1 Zea mays full-length cDNA clone ZM_BFb0131G23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306699.10.0knotted related homeobox 8
SwissprotO650341e-110KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-110KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLB4FHU30.0B4FHU3_MAIZE; Uncharacterized protein
TrEMBLK4JFG70.0K4JFG7_MAIZE; HB-type transcription factor (Fragment)
STRINGGRMZM2G135447_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-85KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]