PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G135447_P01 | ||||||||
Common Name | LOC606458, Zm.29383 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TALE | ||||||||
Protein Properties | Length: 364aa MW: 40276.3 Da PI: 6.3232 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.6 | 1.1e-09 | 282 | 317 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+ +gL+ +q+ +WF N+R ++ GRMZM2G135447_P01 282 YKWPYPSETEKMALAETTGLDPKQINNWFINQRKRH 317 4679*****************************885 PP | |||||||
2 | ELK | 42.8 | 1e-14 | 237 | 258 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKhqLlrKY+gyLg+L+qEFs GRMZM2G135447_P01 237 ELKHQLLRKYGGYLGGLRQEFS 258 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.1E-19 | 100 | 144 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.6E-21 | 101 | 141 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.2E-24 | 156 | 207 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.2E-21 | 161 | 204 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 11.575 | 237 | 257 | IPR005539 | ELK domain |
SMART | SM01188 | 4.2E-8 | 237 | 258 | IPR005539 | ELK domain |
Pfam | PF03789 | 3.9E-11 | 237 | 258 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.005 | 257 | 320 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-19 | 258 | 328 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.8E-12 | 259 | 324 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-28 | 262 | 324 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.35E-12 | 269 | 320 | No hit | No description |
Pfam | PF05920 | 2.6E-16 | 277 | 316 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 295 | 318 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MDSFGDLGGG GSSSSRAASA PFLQLPLPAS TSSAQQQVLF PLPDGPQQQH HHHSSRIPLR 60 QLLLLADPSS AAQHSASHRT KDMATVQGEM SSPAVDGDAD AIKARIMSHP QYSALLAAYL 120 DCQKVGAPPD VSDRLSAMAA ANLDAQPGPI SRRRGPTTTR ADDPELDQFM EAYCNMLVKF 180 HEEMARPIQE ATEFFNSMER QLGSTISDSN CEVAGSSEDE QDASWPEEID PCAEDKELKH 240 QLLRKYGGYL GGLRQEFSKR KKKGKLPKEA RQKLLHWWEL HYKWPYPSET EKMALAETTG 300 LDPKQINNWF INQRKRHWKP ASEDMPFAVM EGGFHVAQGT AALYMDRPAV PPFMADGGMY 360 RLGS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G135447 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the embryo at 4 days after pollination (DAP) in the ventral and basal part of the embryo including the initial of the shoot apical meristem (SAM). At 5 DAP, expressed at the ventral side of the embryo, but the expression within SAM is down-regulated. At 7 DAP, expression is restricted to the boundaries between the embryonic organs, between the scutellum and the coleoptile, the coleoptile and the second leaf primordium, the shoot apical meristem and the first leaf primordium, the first leaf primordium and the coleoptile, the coleoptile and the epiblast and at the tip of the epiblast, but not in the leaf primordia. {ECO:0000269|PubMed:10080693}. | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the embryo at 4 days after pollination (DAP) in the ventral and basal part of the embryo, including the initial of the shoot apical meristem (SAM). At 5 DAP, expressed at the ventral side of the embryo, but the expression within SAM is down-regulated. At 7 DAP, expression is restricted to the boundaries between the embryonic organs, between the scutellum and the coleoptile, the coleoptile and the second leaf primordium, the shoot apical meristem and the first leaf primordium, the first leaf primordium and the coleoptile, the coleoptile and the epiblast and at the tip of the epiblast, but not in the leaf primordia. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10095070, ECO:0000269|PubMed:9869405}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, rachis and inflorescence. {ECO:0000269|PubMed:9869405}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00671 | PBM | 25215497 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G135447_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036681 | 0.0 | BT036681.1 Zea mays full-length cDNA clone ZM_BFb0131G23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001306699.1 | 0.0 | knotted related homeobox 8 | ||||
Swissprot | O65034 | 1e-110 | KNOSC_ORYSI; Homeobox protein knotted-1-like 12 | ||||
Swissprot | O80416 | 1e-110 | KNOSC_ORYSJ; Homeobox protein knotted-1-like 12 | ||||
TrEMBL | B4FHU3 | 0.0 | B4FHU3_MAIZE; Uncharacterized protein | ||||
TrEMBL | K4JFG7 | 0.0 | K4JFG7_MAIZE; HB-type transcription factor (Fragment) | ||||
STRING | GRMZM2G135447_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4061 | 38 | 73 | Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 2e-85 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G135447_P01 |
Entrez Gene | 606458 |