PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04169.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 605aa MW: 66499.1 Da PI: 5.2485

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04169.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.5	6e-35	161	252	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl k+ye++ed+++++++sw g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+ weF+ Zmw_sc04169.1.g00070.1.am.mk 161 FLIKTYEMVEDPATNHVVSWGPGGASFVVWNPPDFSQELLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFA 232 9**************************************************************999......... PP ESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkks 102 ++ F +g+++ll++i+r+k Zmw_sc04169.1.g00070.1.am.mk 233 NEDFIRGHTHLLKNIHRRKP 252 ***************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	3.81E-36	156	250	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.0E-62	157	250	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	5.1E-39	157	250	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.8E-19	161	184	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.8E-31	161	250	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.8E-19	199	211	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	200	224	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.8E-19	212	224	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000302	Biological Process	response to reactive oxygen species
GO:0010200	Biological Process	response to chitin
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence Send to blast
LAPALSFTST SGPGQSPRYK TFAPRLHRRR QTAIDRSLLV FLPAAAAARS SRELAGCVSS 60 ASTATSDSGT DPCGNDEEGD EKCPARIGAS CRDLVRVSVK WFFSGSASGS CAACCFPLLR 120 LPLMLLGKER ESETEAAGME GSQSRSGGGG GGGGSSSPPP FLIKTYEMVE DPATNHVVSW 180 GPGGASFVVW NPPDFSQELL PKYFKHNNFS SFIRQLNTYG FRKIDPERWE FANEDFIRGH 240 THLLKNIHRR KPVHSHSVQN QVNTLAESER REYEDEIKRL KYEKSLLLAD LQKQDQQRCL 300 TNWQMQSLED RLMQMEQRQK NIVASLCDIL QRNGAVASPL SLQTDHFNFS KKRRVPKIGF 360 FADDDAAVEE ERQASFLQMM GAVPKSPSVF PVQQHPVNAE PFDRMETSLV SLEKFIQRAS 420 DADASPEDMF AIADAPSLAV ALGEVQSAPT ETGINLQSST GQVHSSAGFA ESSCYASSPM 480 LPLADLREDA PRTAKVDINS DTTSTDTSQD EATTETGGSL SQEPAKVNDV FWERFLTETP 540 KFGRAGEADS GRQEDECKSE PAEVKEDEKV AVDCSSLHRY KVVDQITEQM GQLASAEYAV 600 PHHLR

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence Send to blast

LAPALSFTST SGPGQSPRYK TFAPRLHRRR QTAIDRSLLV FLPAAAAARS SRELAGCVSS  60
ASTATSDSGT DPCGNDEEGD EKCPARIGAS CRDLVRVSVK WFFSGSASGS CAACCFPLLR  120
LPLMLLGKER ESETEAAGME GSQSRSGGGG GGGGSSSPPP FLIKTYEMVE DPATNHVVSW  180
GPGGASFVVW NPPDFSQELL PKYFKHNNFS SFIRQLNTYG FRKIDPERWE FANEDFIRGH  240
THLLKNIHRR KPVHSHSVQN QVNTLAESER REYEDEIKRL KYEKSLLLAD LQKQDQQRCL  300
TNWQMQSLED RLMQMEQRQK NIVASLCDIL QRNGAVASPL SLQTDHFNFS KKRRVPKIGF  360
FADDDAAVEE ERQASFLQMM GAVPKSPSVF PVQQHPVNAE PFDRMETSLV SLEKFIQRAS  420
DADASPEDMF AIADAPSLAV ALGEVQSAPT ETGINLQSST GQVHSSAGFA ESSCYASSPM  480
LPLADLREDA PRTAKVDINS DTTSTDTSQD EATTETGGSL SQEPAKVNDV FWERFLTETP  540
KFGRAGEADS GRQEDECKSE PAEVKEDEKV AVDCSSLHRY KVVDQITEQM GQLASAEYAV  600
PHHLR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-25	138	250	1	129	Heat shock factor protein 1
5d5v_B	2e-25	138	250	1	129	Heat shock factor protein 1
5d5v_D	2e-25	138	250	1	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00443	DAP	Transfer from AT4G18880	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:12032317}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810280.1	0.0	heat stress transcription factor A-4d-like
Refseq	XP_025810281.1	0.0	heat stress transcription factor A-4d-like
Swissprot	Q93VB5	1e-164	HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBL	A0A2S3HA79	0.0	A0A2S3HA79_9POAL; Uncharacterized protein
STRING	Si022026m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3296	37	78

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Kojo K, et al. Regulatory mechanisms of ROI generation are affected by rice spl mutations. Plant Cell Physiol., 2006. 47(8): p. 1035-44 [PMID:16816407]