PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03806.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 478aa MW: 51707.7 Da PI: 7.9067 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.5 | 2.2e-52 | 93 | 221 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat Zmw_sc03806.1.g00010.1.am.mk 93 VPPGFRFHPTEEELLNYYLRKKVASQEIDL-DVIRDVDLNKLEPWDIQEkcKIGSgPQNDWYFFSHKDKKYPTGTRTNRAT 172 69****************************.9***************952444443456********************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g+Wkatg+dk++++ + +g++ktLvfykgrap+g+k+dW+mheyrl Zmw_sc03806.1.g00010.1.am.mk 173 AAGFWKATGRDKTIYN-AVKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 221 ****************.8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-58 | 87 | 255 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.83 | 93 | 255 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-28 | 94 | 221 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MDGAIDKSTD GSSPGFFSAL LDYIRPHLSS SATSFFFLLL LQLFFLPLAR THTSCYRAQP 60 RTSRTRKKQC IYTHRVREKE RSMSISVNGQ SCVPPGFRFH PTEEELLNYY LRKKVASQEI 120 DLDVIRDVDL NKLEPWDIQE KCKIGSGPQN DWYFFSHKDK KYPTGTRTNR ATAAGFWKAT 180 GRDKTIYNAV KRIGMRKTLV FYKGRAPHGQ KSDWIMHEYR LDDPADAAST VTAAAVASSD 240 AGQEDGWVVC RVFKKKHHVK ESGSGSGGGK HGHHHGGGGD HGSKMAAAHG HGLQYSSSDD 300 ALDQILQYMG RSCKQEHEIL SPSAGGSGRP AGSRCHLRPI ETVLGEHGFM KLPPLESPSA 360 ATTALTPPPP HVPGEAAASS GGDDLLLHRG GNGITDWAMM DRLVASHLNG QAPDAPVDHH 420 LCSFDGGDDD AGSADGLAFY SAAATRLLSG GSGSGASDDD LWSFARSAAS SSTERLIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-47 | 90 | 256 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-47 | 90 | 256 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-47 | 90 | 256 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-47 | 90 | 256 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-47 | 90 | 256 | 14 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-47 | 90 | 256 | 14 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164672.1 | 1e-177 | NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-117 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A3B6RKJ3 | 0.0 | A0A3B6RKJ3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446XJ84 | 0.0 | A0A446XJ84_TRITD; Uncharacterized protein | ||||
STRING | MLOC_66924.2 | 1e-177 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |