PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03239.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 316aa MW: 34455.7 Da PI: 8.2339

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03239.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.4	2.5e-32	166	223	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+ Zmw_sc03239.1.g00050.1.sm.mkhc 166 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 223 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.4E-34	150	225	IPR003657	WRKY domain
SuperFamily	SSF118290	5.89E-29	158	225	IPR003657	WRKY domain
PROSITE profile	PS50811	31.066	160	225	IPR003657	WRKY domain
SMART	SM00774	1.6E-37	165	224	IPR003657	WRKY domain
Pfam	PF03106	1.7E-25	166	223	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MESFFFSQQL GASVVGGGGR TGAEELVPPY TSITDYLQGF LDPAGLARHL DVPLSSEEVP 60 VKNEMSVDAS LDSQGTSGVA GDGAAMLTPN SSGSLSSSDR EGEGQPRRSK KGIRAKQAED 120 ADAVDQKDLE EGENSMKANK PKKKAEKRQR QPRVAFLTKS EVDHLEDGYR WRKYGQKAVK 180 NSPYPRSYYR CTTPKCGVKK RVERSYQDPS TVITTYEGQH THHSPASLRA GGGHLFMPNA 240 HTLPPHLMPS AGFRADLMSM MHPISMGANP NMYLPSMPPP PPPPVPTSPA PPLHQSHFTD 300 YALLQDLFPS NMPNNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-30	158	226	10	78	Probable WRKY transcription factor 4
2lex_A	5e-30	158	226	10	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00440	DAP	Transfer from AT4G18170	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001147623.1	1e-154	uncharacterized protein LOC100281232
Swissprot	Q8VWJ2	5e-48	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A3L6F9V2	1e-156	A0A3L6F9V2_MAIZE; Putative WRKY transcription factor 71
STRING	AC198725.4_FGP009	1e-154	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]