PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02894.1.g00120.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 308aa    MW: 32015.7 Da    PI: 8.7931
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02894.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.83.7e-43821811100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   +CaaCk+lrrkC++dCv+apyfp ++p+kf  vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+
  Zmw_sc02894.1.g00120.1.sm.mk  82 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPLQREDAVNSLAYEADMRLRDPVYGCVGVIS 162
                                   7******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallkee 100
                                    lq++l+ql+++la++k e
  Zmw_sc02894.1.g00120.1.sm.mk 163 ILQHNLRQLQQDLARAKYE 181
                                   *************998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.67281182IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-4382178IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009799Biological Processspecification of symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009954Biological Processproximal/distal pattern formation
GO:0048441Biological Processpetal development
GO:0005654Cellular Componentnucleoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSRSRCPQAE CEARTAGTKA TRIERRSRSG RDCGGDHPQR AGSSRMASSS ASSMPAPSGS  60
VITVASSSSS AAAAAVCGTG SPCAACKFLR RKCQPDCVFA PYFPPDNPQK FVHVHRVFGA  120
SNVTKLLNEL HPLQREDAVN SLAYEADMRL RDPVYGCVGV ISILQHNLRQ LQQDLARAKY  180
EISKYQQAAA AAANASTGPN GQQAMAEFIG NGGMPNGGHN FINIGHSSTL GSIGVFGQDH  240
FSNTQMLSRS YDGGEPIARL GMNGAYEFGY SATMGGAGGP VSGLGSLGVG SFLKSGTAGG  300
DEKTSAGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-52721851114LOB family transfactor Ramosa2.1
5ly0_B3e-52721851114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00211DAPTransfer from AT1G65620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970852.11e-149LOB domain-containing protein 6
SwissprotQ32SG31e-145LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLK3XL261e-148K3XL26_SETIT; Uncharacterized protein
STRINGSi002599m1e-149(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895