PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02571.1.g00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 355aa MW: 38293.1 Da PI: 9.0757 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.7 | 8.1e-52 | 24 | 156 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdeel+ +yL+k++++ ++++ vi+evdiyk++PwdLp+k+ +e ewyfFs+rd+ky++g r+nra+ Zmw_sc02571.1.g00130.1.sm.mkhc 24 LPPGFRFHPTDEELILYYLRKRAASAPCPA-PVIAEVDIYKFDPWDLPAKAVFGEGEWYFFSPRDRKYPNGVRPNRAAG 101 79***************************9.89***************87778899*********************** PP NAM 80 sgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatg+dk+++++ +++ +g+kk Lvfykgr pkg+kt+W+mheyrl Zmw_sc02571.1.g00130.1.sm.mkhc 102 SGYWKATGTDKPITHSaaaptdRSAMIGVKKALVFYKGRPPKGTKTTWIMHEYRL 156 ***************98888877778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-63 | 22 | 189 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.575 | 24 | 189 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-27 | 25 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0009835 | Biological Process | fruit ripening | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MTIELALAAA PSSSSAGGGM PRPLPPGFRF HPTDEELILY YLRKRAASAP CPAPVIAEVD 60 IYKFDPWDLP AKAVFGEGEW YFFSPRDRKY PNGVRPNRAA GSGYWKATGT DKPITHSAAA 120 PTDRSAMIGV KKALVFYKGR PPKGTKTTWI MHEYRLADAL NAANTYRPMR LKNASMRLDD 180 WVLCRIYKKT NPQLTYSSSP PLDAEISMDG VQGHQQDGSI FADVAVAAAA YGSSAGRLPR 240 PPSISDYLVD YSAVSELFDN IPAPQLGTTD TGSSSGAGAA AHQFLLGSNS QASGLSSVAP 300 QLSSHKRQLI EDYSNSSVEM LQASNNKRAL SDASMAVNNS FSMFGPGYPS LQDRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-70 | 24 | 191 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00221 | DAP | Transfer from AT1G69490 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816084.1 | 1e-140 | NAC transcription factor 29-like | ||||
Swissprot | K4BNG7 | 2e-88 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | A0A1E5UWU9 | 1e-144 | A0A1E5UWU9_9POAL; NAC transcription factor NAM-B2 | ||||
STRING | Pavir.Ea00837.1.p | 1e-135 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Publications ? help Back to Top | |||
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