PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02065.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 597aa    MW: 64847.2 Da    PI: 9.384
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02065.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.11.8e-352683592102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+
  Zmw_sc02065.1.g00010.1.am.mk 268 FLTKTYQLVDDPAVNDIISWNDDGSAFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFA 339
                                   9*****************************************************************99.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F++gkk+ll++i+r+k 
  Zmw_sc02065.1.g00010.1.am.mk 340 NDCFQRGKKRLLCDIHRRKV 359
                                   *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.4E-38259352IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-60264357IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-34265357IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.7E-32268357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-20268291IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-20306318IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340307331IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-20319331IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
YNGTPRFLYP FASLFCAFNH GRHESQSQDH GEFLTFLLKR YGGEICLQSG VKVSCASHTL  60
THSRFLRSPT DLLRRVPELQ ACRWLNGPLF AFSYPLSGPA RPHLTLLSHP VVLVPAFPGS  120
TSRSAPSRPL LAQNAAIGTE RVGFLSFRFS NGWAELMGRS TTRLPAPVAA LAKRGSRVDR  180
DPLLSLRNSL PSSSLPPSLL STPRKPRERS RSHHLRSYAS FPSPPRSMAA EQPAGEPSPP  240
PLPSAHPPAP AEGAPSPLAS QRSVPTPFLT KTYQLVDDPA VNDIISWNDD GSAFVVWRPA  300
EFARDLLPKY FKHNNFSSFV RQLNTYGFRK IVPDRWEFAN DCFQRGKKRL LCDIHRRKVT  360
PSAAPTGAVT VAATPLPVAL PVVSPACSGE EQVLSTSSSP EPPTRQQPSG SGSGGAASGD  420
VGEENDRLRR ENARLARELA QMKKLCNNIL LLMSKYAATQ QLDAAKAGNC SGESVEAAPP  480
PPPPPPPSIL ELMPSCPGAP AAAERDAGTT EEDEEEKMSA RLFGVSIGRK RMRGDGDSDS  540
GEEPFRHAAE VKPEPMDAQP PEQHRPHHGE EPQAWPIYRP TPVRAGSGSD RSGSNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2424736015131Heat shock factor protein 1
5d5v_B2e-2424736015131Heat shock factor protein 1
5d5v_D2e-2424736015131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1527533GRKRMRG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659656.11e-147PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ6Z9C81e-133HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLJ3MV031e-145J3MV03_ORYBR; Uncharacterized protein
STRINGOB08G29340.11e-146(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]