PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01775.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 487aa    MW: 54767.1 Da    PI: 9.1325
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01775.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.74.5e-094124462155
                                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   + +yps++e+  LA+ +gL+++qV +WF N+R ++
  Zmw_sc01775.1.g00020.1.am.mk 412 RWPYPSETEKIALAEATGLDQKQVNNWFINQRKRH 446
                                   679*****************************885 PP
2ELK42.61.2e-14366387122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELKh+Ll+KY+gyLg+L+qEFs
  Zmw_sc01775.1.g00020.1.am.mk 366 ELKHHLLNKYGGYLGGLRQEFS 387
                                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-19233277IPR005540KNOX1
PfamPF037901.2E-21234275IPR005540KNOX1
SMARTSM012562.4E-24283334IPR005541KNOX2
PfamPF037913.2E-19289333IPR005541KNOX2
SMARTSM011881.1E-7366387IPR005539ELK domain
PROSITE profilePS5121311.313366386IPR005539ELK domain
PfamPF037898.3E-11366387IPR005539ELK domain
PROSITE profilePS5007113.248386449IPR001356Homeobox domain
SuperFamilySSF466897.7E-20387458IPR009057Homeodomain-like
SMARTSM003891.9E-12388453IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.9E-28391452IPR009057Homeodomain-like
CDDcd000862.52E-11398449No hitNo description
PfamPF059204.9E-16406445IPR008422Homeobox KN domain
PROSITE patternPS000270424447IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MHRRVRPSRQ AERSEQRASE LIKLWRDSIV DLTRPQQPGI RRGSRGNGQG DGGCMAWARC  60
VGRWPRDLTR PGRQRDPPPA IRAALRPDSG AQCWSVLLAS FSASSRHARM FLYRYLVWSF  120
PLRWSLSILA ENSLAVRQAA VILRLTNTEG AMERFAELGG GGSSSTFNAS FLQLPLPAAA  180
SAQAIPPKAQ QDRSRLALQQ LPADPSSSVP TVRHNHQKGG EVVMGEISPA DAETVKAEIM  240
SHPQYPALLT AYLDCQKVGA PPDVSDRLSA VAAKVDTLQW KDQRRPQRAN PELDQFMEAY  300
RNMLVKCQEE LARPIQEAAE FFNSVEKQLD SITDSSTRDG AGSSDVDDDQ DASCPEELDP  360
CAEDKELKHH LLNKYGGYLG GLRQEFSKRK KKGKLPKEAR QKLLQWWELH YRWPYPSETE  420
KIALAEATGL DQKQVNNWFI NQRKRHWKPT SEDMPPFAMV MEGGFHAPPA LYMDRPFMAD  480
GMYRLGP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795146.11e-156homeobox protein knotted-1-like 12 isoform X3
SwissprotO650341e-102KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-102KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A0A9GAR11e-174A0A0A9GAR1_ARUDO; Uncharacterized protein
STRINGPavir.Ia00428.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]