PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01388.1.g00220.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 382aa    MW: 41284.7 Da    PI: 8.1974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01388.1.g00220.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.2e-07194216123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   + C+ Cgk F+r  nL+ H+r H
  Zmw_sc01388.1.g00220.1.sm.mk 194 HYCQVCGKGFKRDANLRMHMRAH 216
                                   68*******************99 PP
2zf-C2H210.80.0015283306123
                                   EEETTTT.EEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                                   y+C+ C+ k+Fs  s+L++H + +
  Zmw_sc01388.1.g00220.1.sm.mk 283 YVCNRCNlKHFSVLSDLRTHEKHC 306
                                   9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.81E-6191218No hitNo description
SMARTSM003550.0034194216IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-6194220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653194221IPR007087Zinc finger, C2H2
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
SMARTSM00355140245278IPR015880Zinc finger, C2H2-like
SMARTSM0035547283309IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MMGSSSMIPP VPGSGGNPPY FLQQQQQQDL FHAQLDGIVM DGGGAFMEPP AADAHCHALL  60
YNLSVLKDKV QQLQPLVGLA VAHDGPVAAA SSGAAAVIQE IISAASSMMY AFQQFYCHAS  120
DQQAVQLVDG HYKENHSSGG CGDQQPQAAV IDQAVNVNLM PQQQHQHGAC SKQTADTAAI  180
IDLDAAELLA KYTHYCQVCG KGFKRDANLR MHMRAHGDEY KSSAALANPA KGGDAAAAPP  240
VKSYYSCPQE GCRWNRKHAK FQPLKSVICA KNHYKRSHCP KMYVCNRCNL KHFSVLSDLR  300
THEKHCGDHR WLCSCGTSFS RKDKLIGHLA LFAGHHPAAP LDSRHATNGK RSSSSTSTPA  360
QQHGGEVPQQ IQGVISQQLM TI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822509.11e-148LOW QUALITY PROTEIN: protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-102STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A1E5WL881e-154A0A1E5WL88_9POAL; Zinc finger protein STOP1-like protein
STRINGSi013894m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251