PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01385.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 307aa MW: 32010.8 Da PI: 8.7931 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.6 | 4.4e-43 | 81 | 180 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ Zmw_sc01385.1.g00020.1.sm.mk 81 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSLAYEADMRLRDPVYGCVGVIS 161 7******************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 lq++l+ql+++la++k e Zmw_sc01385.1.g00020.1.sm.mk 162 ILQHNLRQLQQDLARAKYE 180 *************998865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.634 | 80 | 181 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.8E-43 | 81 | 177 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009799 | Biological Process | specification of symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0005654 | Cellular Component | nucleoplasm |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 307 aa Download sequence Send to blast |
MSRSRCPQAE CEARTAGTKA TRRERSRIGR DCGGDHPQRA GSSRMASSSA SSMPAQSGSV 60 ITMASSSSSA AAAAVCGTGS PCAACKFLRR KCQPDCVFAP YFPPDNPQKF VHVHRVFGAS 120 NVTKLLNELH PFQREDAVNS LAYEADMRLR DPVYGCVGVI SILQHNLRQL QQDLARAKYE 180 ISKYQQAAAA AANASTGPNG QQAMAEFIGN GGMPNGGHNF INIGHSSTLG SIGVFGQDHF 240 SNTQMLSRSY DGGEPIARLG MNGAYEFGYS ATMGGAGGPV SGLGSLGVGS FLKSGTAGGD 300 EKTSAGL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-52 | 71 | 184 | 1 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-52 | 71 | 184 | 1 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00211 | DAP | Transfer from AT1G65620 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970852.1 | 1e-148 | LOB domain-containing protein 6 | ||||
Swissprot | Q32SG3 | 1e-143 | LBD6_MAIZE; LOB domain-containing protein 6 | ||||
TrEMBL | K3XL26 | 1e-146 | K3XL26_SETIT; Uncharacterized protein | ||||
STRING | Si002599m | 1e-147 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 |