PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00956.1.g00210.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 526aa    MW: 59023.4 Da    PI: 6.7069
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00956.1.g00210.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567.4e-18207295399
                                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                     kv   +  ++++ ++lp +fa++++g    s  +tl+++sg++W++++  +  ++++v+++GW+eFv +++++egD ++
  Zmw_sc00956.1.g00210.1.am.mkhc 207 KVV--AGDFTES-ISLPSRFANNFNGH--ISEVVTLKSPSGKTWSIRV-GSDDGDEVVFRSGWNEFVGEQRVEEGDCLL 279
                                     555..4444444.9*******888666..6779***************.3444455*********************** PP

                                     EEE-SSSEE..EEEEE-S CS
                              B3  82 Fkldgrsefelvvkvfrk 99 
                                     Fk++g s f   v vf++
  Zmw_sc00956.1.g00210.1.am.mkhc 280 FKYTGASAF--DVLVFDA 295
                                     ****99999..8888876 PP
2B342.11.5e-13418517199
                                     EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                              B3   1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                     f++v+ ps+v  +  g+++l+ +fa++++g     ++++l+ +sg   W  ++i ++  ++ + ++GW +F ++ng+ e
  Zmw_sc00956.1.g00210.1.am.mkhc 418 FVQVMHPSHVRGKkrGIVILSAEFATKFMGT--LRREIILRRSSGvGAWHARYICNRFARG-LCGRGWCSFTEDNGVVE 493
                                     6777878887655448899*********887..6679********99******86666655.7999************* PP

                                     T-EEEEEE-SS.SEE..EEEEE-S CS
                              B3  77 gDfvvFkldgr.sefelvvkvfrk 99 
                                     +D+++F++++  ++ +++v+v+rk
  Zmw_sc00956.1.g00210.1.am.mkhc 494 RDVCLFEVMQGaRRPTMTVHVLRK 517
                                     *******9977799999**99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-23199298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-22201302IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.367202296IPR003340B3 DNA binding domain
CDDcd100172.22E-18203294No hitNo description
SMARTSM010191.8E-11205296IPR003340B3 DNA binding domain
PfamPF023623.9E-15206294IPR003340B3 DNA binding domain
SuperFamilySSF1019369.42E-16412516IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-17412516IPR015300DNA-binding pseudobarrel domain
CDDcd100174.19E-10416513No hitNo description
PfamPF023623.0E-11418517IPR003340B3 DNA binding domain
SMARTSM010190.0073418518IPR003340B3 DNA binding domain
PROSITE profilePS508638.163435518IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MSPQPQWAVL GWQAGCTGPS AHFQREPSSE ENARTTPAWK GSISSICRSG RGAPSPSEAT  60
PGPQLWSLPS VSALYRAVCG HQHPATDLLE FCDYKMNTDH ERCVERAGFS FWSDTNDGDK  120
HFFKIMAAET SPRKYRSFTW TPRAAKLKSP ELLPFHPSLL GFHLEIPFYL PTLQIMKNLD  180
KKCRVCMEWQ EHCYWSHMAD EEKHFFKVVA GDFTESISLP SRFANNFNGH ISEVVTLKSP  240
SGKTWSIRVG SDDGDEVVFR SGWNEFVGEQ RVEEGDCLLF KYTGASAFDV LVFDASGCEK  300
KTPPCVSQIR GYQQEEDGGD AQLELEAAVH KNTGRSNAST TNLPDGTEQD GWGWRACEVK  360
EEDEDDVEIL DGDGGAPATA AGYYFGNVGP ASEYRLTEED REQIWSVRVP VRPRNPVFVQ  420
VMHPSHVRGK KRGIVILSAE FATKFMGTLR REIILRRSSG VGAWHARYIC NRFARGLCGR  480
GWCSFTEDNG VVERDVCLFE VMQGARRPTM TVHVLRKVRG RYVPLS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982409.21e-140B3 domain-containing protein Os03g0622200
SwissprotQ10GM31e-104Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLA0A368SJ491e-139A0A368SJ49_SETIT; Uncharacterized protein
STRINGPavir.Ib03973.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]