PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00675.1.g00330.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 355aa    MW: 38765.4 Da    PI: 7.0082
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00675.1.g00330.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-171865148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT eEd ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Zmw_sc00675.1.g00330.1.am.mk 18 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 65
                                  89********************************************97 PP
2Myb_DNA-binding53.65.1e-1771114146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Zmw_sc00675.1.g00330.1.am.mk  71 RGNLTPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 114
                                   7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1991365IPR017930Myb domain
SuperFamilySSF466896.74E-3115112IPR009057Homeodomain-like
SMARTSM007171.2E-131767IPR001005SANT/Myb domain
PfamPF002496.1E-151865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-231972IPR009057Homeodomain-like
CDDcd001671.54E-112065No hitNo description
PROSITE profilePS5129426.28166120IPR017930Myb domain
SMARTSM007171.5E-1570118IPR001005SANT/Myb domain
PfamPF002496.9E-1671114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2473119IPR009057Homeodomain-like
CDDcd001674.03E-1375114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAATMSKQQQ QDEMELRRGP WTLEEDNLLM NYIACHGEGR WNLLARCSGL KRTGKSCRLR  60
WLNYLKPDIK RGNLTPEEQL LILELHSKWG NRWSRIAQHL PGRTDNEIKN YWRTRVQKQA  120
RQLRVDANSP VFRDAVRCYW MPRLLEKMAA TTAHHSHMSM DPAAPLLHPA ASIGDMHMAS  180
SSPRIHHGCS QGQPHDAINT PAATSGAGYY HVVDPSPSTS TTSGSGSTTA AAALPPVPCF  240
SELSWFDQQY YGVRPCDDPA GVFDPAGMGN LGLDGLDLGP ADCAYSDSTL LDYLNSTCTG  300
STTTTTVLGS GAAGYATDDV DGAYYGGGPT TWRSTDELCQ AARKVGDHHQ RGGGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-27151191104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643700.11e-143PREDICTED: transcription repressor MYB4-like
SwissprotQ9C9G73e-79MYB62_ARATH; Transcription factor MYB62
TrEMBLJ3KW191e-142J3KW19_ORYBR; Uncharacterized protein
STRINGPavir.Ea00660.1.p1e-156(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]