PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00646.1.g00240.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 361aa    MW: 38873.9 Da    PI: 9.3458
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00646.1.g00240.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.2e-13103147347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     +WT+eE+  ++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
  Zmw_sc00646.1.g00240.1.sm.mkhc 103 PWTEEEHRMFLMGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 147
                                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532419IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.96896152IPR017930Myb domain
SuperFamilySSF466891.79E-1698152IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1899150IPR006447Myb domain, plants
SMARTSM007172.6E-11100150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-12100146IPR009057Homeodomain-like
CDDcd001674.69E-9103148No hitNo description
PfamPF002491.1E-10103147IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0030307Biological Processpositive regulation of cell growth
GO:0046686Biological Processresponse to cadmium ion
GO:0048366Biological Processleaf development
GO:2000469Biological Processnegative regulation of peroxidase activity
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MTQRCSHCSN NGHNARTCPA RGGGGGVRLF SGRLTSAPAP VTMKKSGSMS CIASSLGSGS  60
GGSLPAAGGA DACRGGGEGY VSDDPAHASC SANGRAERKK GTPWTEEEHR MFLMGLQKLG  120
KGDWRGISRN FVVSRTPTQV ASHAQKYFIR HTNSSRRKRR SSLFDMVPEM PMDESPIAAA  180
MEQFPCQNNQ DEATSSIHFP SLHVGLQKET EFAKQLPSLQ SRQHEESGFT EPSLPPVDME  240
MNPSASFKAI TASTVPAFYP ASVPVMLTLW PPNIANLENT GTSHEILRPT PLKGKEVIKA  300
DNVVGMSKLT IDEATAGSME PTSLSLKLIE SMDTRQSAFH VSPRRTRPDL SKRNNSPIHA  360
V
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00551DAPTransfer from AT5G47390Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149973.11e-178myb-related transcription activator
TrEMBLA0A3L6DKX91e-180A0A3L6DKX9_MAIZE; Transcription factor MYBS3
STRINGSb03g003270.11e-174(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791