PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00131.1.g00260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 189aa MW: 21367.2 Da PI: 10.2582 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35 | 3.3e-11 | 66 | 98 | 3 | 36 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36 WT+eEde l +av + g++Wk+Ia+ ++ Rt Zmw_sc00131.1.g00260.1.sm.mk 66 GWTPEEDETLRNAVDAFKGRQWKKIAEFVP-DRT 98 6*****************************.999 PP | |||||||
2 | Myb_DNA-binding | 49.5 | 9.9e-16 | 98 | 139 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 teEd+++++ vk++G++ W+ Ia+ ++ gR +kqc++rw+++l Zmw_sc00131.1.g00260.1.sm.mk 98 TEEDDIIINMVKKHGPRKWSMIASSLN-GRIGKQCRERWHNHL 139 8**************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 32.9 | 1.5e-10 | 145 | 178 | 1 | 36 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 + +WT eE+ +++a++ +G++ W+ Ia+ ++ gR Zmw_sc00131.1.g00260.1.sm.mk 145 KEAWTVEEEHVIANAHRVYGNK-WAEIAKLLP-GRN 178 579*******************.*********.996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-10 | 61 | 98 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.73E-8 | 62 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7 | 63 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 4.0E-5 | 67 | 98 | No hit | No description |
PROSITE profile | PS51294 | 21.179 | 85 | 143 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-8 | 98 | 141 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.52E-11 | 99 | 139 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-24 | 99 | 145 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.96E-23 | 99 | 181 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 6.1E-15 | 99 | 153 | No hit | No description |
PROSITE profile | PS51294 | 10.493 | 144 | 189 | IPR017930 | Myb domain |
SMART | SM00717 | 0.66 | 144 | 187 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-14 | 146 | 179 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.35E-4 | 147 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MPAVKVEERD GTEEKWRNLE VLLPSPSAGT SRGGARMSPV VSSPSDSVSR PSIKRTSGPV 60 RRAKSGWTPE EDETLRNAVD AFKGRQWKKI AEFVPDRTEE DDIIINMVKK HGPRKWSMIA 120 SSLNGRIGKQ CRERWHNHLD PQIKKEAWTV EEEHVIANAH RVYGNKWAEI AKLLPGRNTL 180 QSGEVDRIA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-39 | 63 | 177 | 5 | 142 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-39 | 63 | 177 | 5 | 142 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809062.1 | 3e-78 | transcription factor MYB3R-2-like isoform X1 | ||||
Refseq | XP_025809063.1 | 5e-82 | transcription factor MYB3R-2-like isoform X2 | ||||
Swissprot | Q0JHU7 | 1e-64 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A0A0A9DCG7 | 2e-78 | A0A0A9DCG7_ARUDO; Uncharacterized protein | ||||
STRING | LPERR05G15070.1 | 2e-72 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Publications ? help Back to Top | |||
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