PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G02320.1 | ||||||||
Common Name | ATMYB3R5, MYB3R-5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 548aa MW: 61731.5 Da PI: 8.4448 | ||||||||
Description | myb domain protein 3r-5 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.6e-18 | 75 | 121 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+++ g++Wk+Ia+ ++ Rt+ qc +rwqk+l AT5G02320.1 75 KGGWTPEEDETLRRAVEKYKGKRWKKIAEFFP-ERTEVQCLHRWQKVL 121 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 61.9 | 1.3e-19 | 127 | 173 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++v++vk++G+ W+ Ia+ ++ gR +kqc++rw+++l AT5G02320.1 127 KGPWTQEEDDKIVELVKKYGPAKWSVIAKSLP-GRIGKQCRERWHNHL 173 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.3 | 2.3e-15 | 179 | 222 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE+ l + ++++G++ W+ Ia+ ++ gRt++ +k++w++ AT5G02320.1 179 KDAWTVEEESALMNSHRMYGNK-WAEIAKVLP-GRTDNAIKNHWNS 222 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.547 | 70 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-16 | 74 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-16 | 75 | 121 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.73E-16 | 76 | 131 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 77 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.87E-14 | 78 | 121 | No hit | No description |
PROSITE profile | PS51294 | 31.882 | 122 | 177 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.6E-32 | 124 | 220 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-18 | 126 | 175 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-18 | 127 | 173 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.89E-15 | 129 | 173 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-26 | 134 | 180 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-15 | 178 | 226 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.342 | 178 | 228 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.0E-14 | 179 | 222 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 181 | 228 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.64E-11 | 181 | 224 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MSSSSNPPVC SPEKEERSEM KIEIQCMENK QPLAASCSSA SEGSGCFFLK SPEIATPATV 60 SSFPRRTSGP MRRAKGGWTP EEDETLRRAV EKYKGKRWKK IAEFFPERTE VQCLHRWQKV 120 LNPELVKGPW TQEEDDKIVE LVKKYGPAKW SVIAKSLPGR IGKQCRERWH NHLNPGIRKD 180 AWTVEEESAL MNSHRMYGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLEF YLATGNLPPP 240 ASKFIVLKDI ADGDRDSKQS SATKPFKDSD SLTQTSSGNT DSNEVGRDHF DSSSALLEEV 300 AASRRIGVNE YACSPVEYKP QLPNLEPISE EVRINSKAYF ERSIQRKVEN GFGTPKHGNL 360 YYKSPLDYYF PSEADLQHMY GYECGCSPGA ASPVSLMTTP CNKDSGLTAT RSPESFLREA 420 ARTFPNTPSI FRKRRKVVLA AKTDAVVVVN GVVKEVDRKE ESKDMRKSLL LETTDNCSDD 480 EELGLNGNAF NLSPPYRLRA KRTAVIKSRQ LEFTSEKEKQ PDNEIEFTSA KEKQPDNEIK 540 TSEEDKPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-71 | 74 | 228 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-71 | 74 | 228 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 265301_s_at | 1e-107 | ||||
Expression Atlas | AT5G02320 | - | ||||
AtGenExpress | AT5G02320 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a putative c-MYB-like transcription factor of the MYB3R factor gene family (MYB3R5). | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G02320.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G02320 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519649 | 0.0 | AY519649.1 Arabidopsis thaliana MYB transcription factor (At5g02320) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001190206.1 | 0.0 | myb domain protein 3r-5 | ||||
Refseq | NP_568099.1 | 0.0 | myb domain protein 3r-5 | ||||
Swissprot | Q6R032 | 0.0 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
TrEMBL | A0A178UP96 | 0.0 | A0A178UP96_ARATH; MYB3R-5 | ||||
STRING | AT5G02320.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1667 | 28 | 87 | Representative plant | OGRP5 | 17 | 1784 |
Link Out ? help Back to Top | |
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Phytozome | AT5G02320.1 |
Entrez Gene | 831802 |
iHOP | AT5G02320 |
wikigenes | AT5G02320 |