PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00039.1.g00390.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 514aa    MW: 55375.4 Da    PI: 8.3493
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00039.1.g00390.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY856.9e-27333392258
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                   dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r ++dp + e+tY g+H++
  Zmw_sc00039.1.g00390.1.am.mk 333 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnfyGCEAKKKVQRLDDDPFTYEVTYCGNHTC 392
                                   8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-26329392IPR003657WRKY domain
SuperFamilySSF1182904.32E-24331392IPR003657WRKY domain
SMARTSM007744.8E-37332394IPR003657WRKY domain
PROSITE profilePS5081121.494333390IPR003657WRKY domain
PfamPF031064.1E-25333392IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MTHEPMAACL CSGIDHLESC GYYRVEINRS VPPCSMWWFS HLLLFCAVDL ARQRRSSTKS  60
SAKEGKTINN AVVSFLRVFY HVIASSPPSP SEATQTPLFM HVLARRPSPH HPFTFDLGDT  120
TNIKQKIASD DPLGQQGAMD DVLAQISDAF RLARELMDEL PATQNDPAYL ANRCHSIIRA  180
YVAAIRMLQP HGGADVAAQP PPPPFASDLL RLWCADKQVA GGTAANPFLG SPPSMSQLGR  240
LLESSSSSFH TLAEAFGGAR PAPEMARTGP DVAGTSGGPV RRVAPSSRGS TRIQPRQGRR  300
RYVRSWRKRE SGERMTVFVP VQRAGGNMDQ PPDDGYTWRK YGQKDILGSR YPRSYYRCTH  360
KNFYGCEAKK KVQRLDDDPF TYEVTYCGNH TCLTSTTPLL TLPATAGTRA DTVAANSPTS  420
SAAILGHPDI TMAAAEHHPA PALSTSIQLG MTWMPSSLVG ASSTSAGAGE GSGAQAHVPT  480
AAGTGRDVEY PLMDLTDAIF NSGSSGGSSM DAIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-21333392968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439531.21e-122probable WRKY transcription factor 17
TrEMBLA0A1Z5R1R11e-121A0A1Z5R1R1_SORBI; Uncharacterized protein
STRINGSi025307m1e-115(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344