PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma89g00440.1 | ||||||||
Common Name | ZOSMA_89G00440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 193aa MW: 22078.6 Da PI: 10.503 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.3 | 2.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+ nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gk y +s+ Zosma89g00440.1 9 KRIENNLNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPSGKAYQFSN 59 79***********************************************85 PP | |||||||
2 | K-box | 53.1 | 1.3e-18 | 81 | 162 | 9 | 90 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 ++++ e ++ e+++Lkk + + ++h+ G+dL s ++e++qLe+q+ ++l++iR++K +l++++i+ l+kk ++ + Zosma89g00440.1 81 QDTRGIECWRIEVENLKKLAVSSEARIKHMCGDDLASVGMREIKQLERQMRTGLQRIRAQKRRLVTDHIKMLKKKDENSYLQ 162 566778999******************************************************************9886544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.366 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.46E-32 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.57E-39 | 2 | 70 | No hit | No description |
PRINTS | PR00404 | 8.9E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.581 | 86 | 171 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.6E-15 | 86 | 159 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MGRGKVELKR IENNLNRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP SGKAYQFSNN 60 DIDMTISRYR SLGGLPDLND QDTRGIECWR IEVENLKKLA VSSEARIKHM CGDDLASVGM 120 REIKQLERQM RTGLQRIRAQ KRRLVTDHIK MLKKKDENSY LQRRMQEACK AMEAKNLETI 180 PHAPSAGRFN LN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 9e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 9e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 9e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 9e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 8e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 8e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 8e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 8e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026385965.1 | 1e-73 | MADS-box transcription factor 14-like isoform X2 | ||||
Refseq | XP_026461003.1 | 2e-73 | MADS-box transcription factor 14-like isoform X2 | ||||
TrEMBL | A0A0K9NLX4 | 1e-140 | A0A0K9NLX4_ZOSMR; MADS-box transcription factor AG | ||||
STRING | Migut.D01274.1.p | 2e-68 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP41745 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 2e-43 | AGAMOUS-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Zosma89g00440.1 |