PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma85g01140.1
Common NameZOSMA_85G01140
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 238aa    MW: 26900.7 Da    PI: 8.1124
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma85g01140.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.2e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +lvd +   G  +W+ +++  g+ R++k+c++rw +yl
  Zosma85g01140.1 14 KGPWTVEEDRKLVDFILTNGQCCWRIVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding49.21.2e-1572111647
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + E++l +d++++ G++ W++Ia +m+ gRt++++k++w+++
  Zosma85g01140.1  72 EAEEKLVIDLHARIGNR-WSKIAGRMP-GRTDNEIKNHWNTH 111
                      67***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-19562IPR009057Homeodomain-like
PROSITE profilePS5129413.419961IPR017930Myb domain
SuperFamilySSF466893.18E-2611108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
PfamPF002495.1E-131461IPR001005SANT/Myb domain
CDDcd001676.47E-81661No hitNo description
PROSITE profilePS5129424.60962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2363116IPR009057Homeodomain-like
SMARTSM007175.3E-1366114IPR001005SANT/Myb domain
CDDcd001671.39E-971112No hitNo description
PfamPF002491.4E-1372111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRKPCCDKL GVKKGPWTVE EDRKLVDFIL TNGQCCWRIV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL NEAEEKLVID LHARIGNRWS KIAGRMPGRT DNEIKNHWNT HIKKKLLKMG  120
IDPATHKPIL KKSYSSGDEE MRAAVVAPEN SNKLVSKSPT DDNDRISISY GKNEEKPANV  180
YQWIDDSNLD IPLLVDESWS TSSSSTGAAG DGIFKWVDDD YDWLVDYMEF GGSDFII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021275674.13e-93protein ODORANT1-like
SwissprotQ50EX66e-87ODO1_PETHY; Protein ODORANT1
TrEMBLA0A0K9NLQ41e-173A0A0K9NLQ4_ZOSMR; Protein ODORANT1
STRINGEOY244592e-91(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-82myb domain protein 20
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]