PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma84g00420.1
Common NameZOSMA_84G00420
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 313aa    MW: 33719.3 Da    PI: 5.2322
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma84g00420.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-3089147259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY  eHnh 
  Zosma84g00420.1  89 SDSWTWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLDPTMLIVTYAAEHNHA 147
                      69*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081131.85883149IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-3186149IPR003657WRKY domain
SuperFamilySSF1182907.85E-2687149IPR003657WRKY domain
SMARTSM007745.1E-3688148IPR003657WRKY domain
PfamPF031066.4E-2690146IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGGRSRFERL GSTSTSSGEG GEDFPMTTTF IKKHQSQTLI PSNNSTASSS SPAKKSAGRR  60
SVKKRVVSVP IVEIDGSRPK GGGEGAPPSD SWTWRKYGQK PIKGSPYPRG YYRCSSSKGC  120
PARKQVERSR LDPTMLIVTY AAEHNHAWPL PKNRNHHNHN YQSEPPPLLP PVTAQLPASQ  180
DTEEEVEVEE ELNGSLPQSP NPAATTTTTN TSTCSVDDTN NTPTFAPDLG QDDSPLMMIE  240
EDLGWRPYMS ATSLQSDVAM MMPVSYDDVR KDLSIGDGGG GDEDEDGSLF AGLGELPECS  300
VVFRRGFPVG AV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-2064146676Disease resistance protein RRS1
5w3x_D2e-2064146676Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NLH30.0A0A0K9NLH3_ZOSMR; WRKY transcription factor 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-41WRKY DNA-binding protein 65