PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma7g00330.1
Common NameZOSMA_7G00330
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 742aa    MW: 84319.3 Da    PI: 9.3586
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma7g00330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-07291310525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C+ffa+ G C+ G++C+F+H
  Zosma7g00330.1 291 PCKFFAE-GRCRNGENCRFSH 310
                     8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.826163190IPR000571Zinc finger, CCCH-type
SMARTSM003560.051164189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.173286313IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023286312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6288311IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-5290310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4291310IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MTENSRERGS KWDRITDTED FQRHKSDLDI SCSDKTVKND LNIRSPGSNW HDAEAVGSAG  60
KDISWDNYCN DIKEKKTTDT FGRKSYHDWQ KPPSNNGSPK SWRRKSSSSD ELRSRSRSRS  120
RGRSRGRNKS WSRSRSRSIS PNYFHGSRRE SEGYNDRSRV GTGRSLPQCR EFAAGRCRKG  180
GECRFPHDYE GPSHEYGGSA RRSYERNYHN PVSTEDIREN RYERRRYTES MDLRDCSRDR  240
RSIYYDDDRE INRDFRRNNQ EVRERVLDRE ESDEASRYEK RREYHRPYAT PCKFFAEGRC  300
RNGENCRFSH HGPVQSHPIS HASNHQSLNS NAQNRQSVYP TSFNNAIPSH QQIVHPPTPN  360
MQTIPIPALN MPNGQSSGLN AQLKVIPELP FPVNGQGHFG VFPSVPYVQN FNTADHSQQF  420
QHSSPTSHLI QTGLVEVGPT RKQDLMETNT VDPNHNNSLD NKPVTSEQIA QMTNISASLA  480
QIFGNGPQLP QLYAALNPSN NSHMSPAVAT GPIAQAPQQF VNSVVAVPHS EVDHGALLHN  540
FTSESGKIDQ TNLTHGSLLS DVTLEQQVSL PLSHFGADEP KYVGHFENKI NLEQKQKSTE  600
ELEIKPIEMN IGDEFRDVNG KLVVEIKKKT PTEVHEKDAT DSQIDGDGKK VNKDVKGIRM  660
FKYSLVEFIK GILKPIWKEG NVSKESHKTI VKKVVDKVTG SLQTNIPQTQ EKIDVYLSHS  720
KPKLSKLVQA YVERYSKIPD K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122RSRSRSRGR
2116128RSRSRGRSRGRNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NPU30.0A0A0K9NPU3_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-11C3H family protein