PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma77g00400.1
Common NameZOSMA_77G00400
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 398aa    MW: 44177.9 Da    PI: 7.2467
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma77g00400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.8e-32217270255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Zosma77g00400.1 217 PRMRWTSTLHARFVHAVELLGGHERATPKAVLELMDVKDLTLAHVKSHLQMYRT 270
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.05E-15214270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-28215270IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23217270IPR006447Myb domain, plants
PfamPF002497.2E-7218269IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDTTSMPPPD LSLHISPPTT TTAPSSMHSS STDCDLSLDI WKKIESFKNH NEPSSNTANL  60
SLFRPSSTTD AISVDRQWRT FSSQPPLLPR HDDHHHYQHH RSILEAPLDG LRPIKGIPIY  120
HSTGPLPFFP VNNDPNKTNT SSSSNNNLGL GFSNQIPSYP SSWSSSSSSG LSTPNYQRLV  180
TPTMLKTPVH QFNHQYQFGI GSRLVSKLPT KRSMRAPRMR WTSTLHARFV HAVELLGGHE  240
RATPKAVLEL MDVKDLTLAH VKSHLQMYRT VKTTDRPAAS SGQSEGSGEE DLPSPATDLN  300
FRCFLDTREQ LDHGTSMEQH HEILDNSGTN TTRWSNSSSR GAWLEANSKD TEIFRSATTA  360
FASHQDTSKE LSDSNEDVRI PSLEFTLGRP GWCSKDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-17218272458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-17218272458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-17218272458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-17218272458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-17218272458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-17218272458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-17218272458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-17218272458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775089.14e-89transcription repressor KAN1-like isoform X1
RefseqXP_008775090.14e-89transcription repressor KAN1-like isoform X2
RefseqXP_010241893.16e-89PREDICTED: transcription repressor KAN1-like isoform X2
TrEMBLA0A0K9NNP00.0A0A0K9NNP0_ZOSMR; Transcription repressor KAN1
STRINGXP_008775090.12e-88(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25583787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.11e-48G2-like family protein