PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma77g00210.1
Common NameZOSMA_77G00210
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family SRS
Protein Properties Length: 344aa    MW: 36114.9 Da    PI: 8.3341
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma77g00210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702214.82e-661112744154
           DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...............aeaaskrkrelkskk 82 
                      +++sCqdCGnqakkdC+h+RCRtCCksr++ C thvkstWvpaakrrerqq+l++++++++ s+               + ++skr+re ++ +
  Zosma77g00210.1 111 TSMSCQDCGNQAKKDCMHMRCRTCCKSRNLPCPTHVKSTWVPAAKRRERQQHLSSSMQQQSPSSrlhrasgadhgrgptTGETSKRPREITALA 204
                      5699************************************************999988877666689899888887776667777777765555 PP

           DUF702  83 qsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                       + l+ +++s++    +  + s+P+evss+avfrcv+vs++dd++e++aYqtavsigGh+fkGiLydqG+e+
  Zosma77g00210.1 205 CTRLAVSTISTSG-G-MEMMGSYPSEVSSPAVFRCVKVSAIDDADEQYAYQTAVSIGGHMFKGILYDQGPES 274
                      5555555544433.2.333456************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.4E-63112273IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.5E-26114156IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.9E-27225272IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAGFSLGGNQ PPSEEQIPPE NLFQYHSAGG GPANTSSRNE EITINYAKGF EIWQHHQQHL  60
QQQHQRHHQL QLYSSGLGIY ADDALAGAGP STIAIGSGSG GTGRGLRGAG TSMSCQDCGN  120
QAKKDCMHMR CRTCCKSRNL PCPTHVKSTW VPAAKRRERQ QHLSSSMQQQ SPSSRLHRAS  180
GADHGRGPTT GETSKRPREI TALACTRLAV STISTSGGME MMGSYPSEVS SPAVFRCVKV  240
SAIDDADEQY AYQTAVSIGG HMFKGILYDQ GPESQYSGGG GGGGGGSSSS PVAITSSSAA  300
SIGTSTAAAV AASSMMDPSS TFYSTTPFNV FLSGTQFFPH PRQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276286SGGGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271515.12e-86PREDICTED: protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A0K9NQK10.0A0A0K9NQK1_ZOSMR; Lateral root primordium (LRP) protein-related
STRINGXP_010271515.19e-86(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.12e-53SHI-related sequence 5