PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma76g01070.1
Common NameZOSMA_76G01070
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 376aa    MW: 40755.1 Da    PI: 7.1857
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma76g01070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.2e-08106130126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt+lC+ f++ GtC+y  +C+FaHg
  Zosma76g01070.1 106 FKTKLCCKFRA-GTCPYITNCNFAHG 130
                      69*********.*************8 PP
2zf-CCCH43.36e-14247272126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt++C+ +  tG+C++G++C+FaHg
  Zosma76g01070.1 247 WKTRICNKWEMTGYCPFGSKCHFAHG 272
                      8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-14103138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-8103136IPR000571Zinc finger, CCCH-type
SMARTSM003560.0037105131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.868105132IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5106130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-8180209IPR000571Zinc finger, CCCH-type
SMARTSM003560.53181208IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.53181209IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-7181209IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-17242276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-10243277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422246274IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9246273IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-11247272IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGEYNRNAET NAITITPDPN SQETWLSSLN DQNIWATSDD YSNGENPSET FSNSSFDGGR  60
QAQSRSAIDQ PPNKKPRLTQ GDSQAASVVG GNATTSRSRA IGKMFFKTKL CCKFRAGTCP  120
YITNCNFAHG IDELRKPPPN WQEIVASQDD GSGVSEFKEE PQNAIPIVLS SSNIAGEVQR  180
SYKGRHCKKF YTDEGCPYGD VCTFMHDEQS KSRESVAINL GPTTGIGPAA YGNEAAAGLM  240
SQKPSNWKTR ICNKWEMTGY CPFGSKCHFA HGAAELHRYG GGLVEMDCRD NSSAGGGDSK  300
QSGIIGGTLP SKPSNDTAMT TTNSMSHTDI YHLGVSVQRQ AVGGINPRQG QRPLQKWKGP  360
NKISMIYGDW IVEHD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788666.11e-150zinc finger CCCH domain-containing protein 56-like isoform X2
SwissprotQ84UQ31e-125C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A0K9NR440.0A0A0K9NR44_ZOSMR; Zinc finger CCCH domain-containing protein 56
STRINGXP_008788660.11e-148(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-105C3H family protein