PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma76g00390.1
Common NameZOSMA_76G00390
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 717aa    MW: 79177.5 Da    PI: 7.9416
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma76g00390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-143781147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT+eE+ ++++a k++G   W  I +++  ++t+ q++s+ qk+
  Zosma76g00390.1 37 RERWTEEEHNRFLQALKLYGRA-WQHIQEYVA-TKTAVQIRSHAQKF 81
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.51E-163187IPR009057Homeodomain-like
PROSITE profilePS5129419.9853286IPR017930Myb domain
TIGRFAMsTIGR015576.2E-163584IPR006447Myb domain, plants
SMARTSM007171.5E-123684IPR001005SANT/Myb domain
PfamPF002494.5E-123780IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-83777IPR009057Homeodomain-like
CDDcd001674.03E-93982No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010243Biological Processresponse to organonitrogen compound
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043496Biological Processregulation of protein homodimerization activity
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MMFIDLNHLN LTMDEASSFG EDFNVKARKP YTITKQRERW TEEEHNRFLQ ALKLYGRAWQ  60
HIQEYVATKT AVQIRSHAQK FFSKLEKEAL SKGVVPGQTI NIDIPPPRPK RKPTNPYPRK  120
TCMGTISSSK EGNDKTSSIF SSCQNKTQLS NGLSLENPAR SESSEGTEQA SENCDCSEVF  180
TLFHNDPCAS CTSSVKNCGN PSSIKKFIPI LEDINHTSEM IKDRNSQIAI DNKEAMQYTD  240
NDCDVDIGRL EGIKKSNLNT NSASMEKKAK HKKPDEATSN CLMQDTNERS KKQKCCVQSN  300
SQISQSDIHV CHIPELINES MPAKPEHHTK STTSFNQEHP SSPPFTFFHG NQDVYRSLIN  360
MSSSFSNCIL FCLQQNPSAH VAANLAASVW HCLEGDGMNS TAKVVDGGNY PNNAYTAPNM  420
VAIASATVAA ATAWWATHGL HTFPHPHSTD LNFAGVAPII TNPVSEGREV RKDDSVQFQA  480
QQDERILDSE SPQTAVLQCS TSKSTSSSDC GESKRGDEVI GGNTTKSDRK VNCYSYGSSK  540
LSSTEKYTNV LLKNTESQTL EQVMKSNKLE NQTILSEANG QRIKGSMVVN DSWKEVSEEG  600
RLAFEALFSR EVLPQSFSLT GLTAMGMTPR NLKMGNVKAG DAKRKVSADV VADNDVDMGN  660
SRMKCKLNGN LNLERSGFKP YKRCSMDAKK GTTSQGQGDE KGSRKRLRLE GETTAR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NPD10.0A0A0K9NPD1_ZOSMR; LATE ELONGATED HYPOCOTYL transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.11e-62circadian clock associated 1