PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma75g00050.1
Common NameZOSMA_75G00050
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 270aa    MW: 30372.5 Da    PI: 7.7978
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma75g00050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-0785105526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++f++ G C++G+ C FaHg
  Zosma75g00050.1  85 SCPDFRK-GSCSRGEGCEFAHG 105
                      6******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.003880106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.39981107IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-585105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-586107IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.484115139IPR000571Zinc finger, CCCH-type
SMARTSM0035617115138IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MMMMIPKVQI PVLLDGGEED CIDDDWRGSA SIIDAYSCDE FRMYEFKIRR CVRGRSHDWT  60
ECPYAHPGEK ARRRDPRKYH YSGVSCPDFR KGSCSRGEGC EFAHGVFECW LHPSRYRTQP  120
CKDGVRCRRK VCFFAHTPDQ LRIIPTPIGT VDSYDGSPMR RKQSQSKGVV LSPTSTLAGF  180
GGRSTSLSPT GSESCGSPPV SPTVEELMLE MRKMGIRRSP HSSVPMITGD WMRQMAALNS  240
STTTTSNTIC KPDLYDNVDE PEWFSDLMN*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028554171.11e-85zinc finger CCCH domain-containing protein 2
SwissprotQ9FU273e-75C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A0K9NR660.0A0A0K9NR66_ZOSMR; Zinc finger CCCH domain-containing protein 37
STRINGXP_010086901.11e-80(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.13e-75C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]