PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma70g00660.1

Common Name

ZOSMA_70G00660

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

G2-like

Protein Properties

Length: 268aa MW: 29685.3 Da PI: 7.6395

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma70g00660.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.5	3e-33	25	79	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+ +gLt++hvkSHLQkYRl Zosma70g00660.1 25 RQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGSQGLTIYHVKSHLQKYRL 79 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.856	22	82	IPR017930	Myb domain
SuperFamily	SSF46689	7.53E-17	24	79	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-31	24	80	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-24	26	80	IPR006447	Myb domain, plants
Pfam	PF00249	9.6E-10	27	78	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-22	113	158	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MEMNGDVAIP YNGGTNQTTH PLTSRQRLRW THELHERFVD AVAQLGGPDR ATPKGVLRVM 60 GSQGLTIYHV KSHLQKYRLA KYLPDSSSDG LKAEKKDSGD LLSNLDNSSS GSQITEAMKL 120 QMEVQRRLHE QLEIQRQLQL RIEAQGKYLK KIMEEQQRLS GVLSEGSRLE ISKPDPIDQC 180 QTSEKNKPCT PTPTSESHLH VKSTNGAGVV DGVLKCLSGA DEDSLSSCHE PLTPDSSYQI 240 VSPSRSPENE KVIKRQRSSI EFGQQVN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-22	25	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-22	25	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-22	25	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-22	25	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008782978.1	1e-112	myb family transcription factor PHL7-like
Refseq	XP_008782979.1	1e-112	myb family transcription factor PHL7-like
Refseq	XP_026658512.1	1e-112	myb family transcription factor PHL7-like
Swissprot	Q9SJW0	4e-97	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A0K9NSK5	0.0	A0A0K9NSK5_ZOSMR; Uncharacterized protein
STRING	XP_008782978.1	1e-111	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-72	G2-like family protein

Link Out ? help Back to Top
Phytozome	Zosma70g00660.1