PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma6g00780.1
Common NameZOSMA_6G00780
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 266aa    MW: 29814.9 Da    PI: 6.0699
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma6g00780.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10145192455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   K+ +L + ++YI+sLq
  Zosma6g00780.1 145 SHSLAERARREKISERMKILQDLVPGC----NKVIGKSLVLDEIINYIQSLQ 192
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.18E-9139196No hitNo description
SuperFamilySSF474592.22E-17139209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17141211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.478141191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-8145192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDPRSMVTRR SDPEIWPFQN PGTHREVRRS EVAGSRDGSA EESTVTGQSS GKRNTRRREN  60
GTPVAVSEEE SSKLVSTSSD FDLTECDVKR HKLVKCKDEN GDSKLDMEGN YGNYNNPTDQ  120
SAQPSEAPKQ DYIHVRARRG QATDSHSLAE RARREKISER MKILQDLVPG CNKVIGKSLV  180
LDEIINYIQS LQRQVEFLSM KLEVVNSRIN SSMEEFPAKN FNPVHTFDNA NMTFASPANR  240
EYTGEGSPQE WAPQMQVGTG FENVT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255699.15e-97PREDICTED: transcription factor bHLH79-like
SwissprotQ84T089e-68BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A0K9NSZ60.0A0A0K9NSZ6_ZOSMR; BHLH transcription factor
STRINGXP_010255699.12e-96(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-67BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]