PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma6g00200.1

Common Name

ZOSMA_6G00200

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

G2-like

Protein Properties

Length: 232aa MW: 25737.4 Da PI: 10.3376

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma6g00200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.4	2.8e-32	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LHerF++a++qLGGs++AtPk +l++m+v gLt++h+kSHLQkYRl Zosma6g00200.1 45 KQRLRWTSDLHERFLDAISQLGGSDRATPKGVLRVMGVSGLTIYHIKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.247	42	102	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-17	43	99	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-31	43	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.4E-26	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	3.3E-8	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-24	131	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MYHAKTISTA TLVPHKTKVT NQHPNSEYLG VSPASNPVTL GGSSKQRLRW TSDLHERFLD 60 AISQLGGSDR ATPKGVLRVM GVSGLTIYHI KSHLQKYRLV KYLPESPING STSDKKESTD 120 NLMNMASEPG IKINEALKMQ MEVQKRLHEQ LEVQRKLQLR IEAQGKYLQK IIEEQEKLGN 180 ALTTSEPIPQ PPNTPASSIK KRRIIGDKQA EGSPNAALEQ ENMTNAPRAL R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-24	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-24	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-24	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-24	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010922093.1	6e-96	myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	4e-70	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A0K9NSP8	1e-169	A0A0K9NSP8_ZOSMR; MYB transcription factor
STRING	XP_010251692.1	4e-95	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7913	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-72	G2-like family protein

Link Out ? help Back to Top
Phytozome	Zosma6g00200.1