PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma68g00680.1

Common Name

ZOSMA_68G00680

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YC

Protein Properties

Length: 263aa MW: 29325.6 Da PI: 5.5146

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma68g00680.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	61.1	2.3e-19	7	86	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P +rikki++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v + + fdfl d+v + Zosma68g00680.1 7 TRFPASRIKKIMQADEDVGKIANAVPLLVSKALELFLQDLCDRTYAVTLQRGAKTMNSLHLKQCVRSCNAFDFLSDVVNK 86 579**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-25	3	72	IPR009072	Histone-fold
Pfam	PF00808	5.0E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.08E-19	18	88	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MRKKLGTRFP ASRIKKIMQA DEDVGKIANA VPLLVSKALE LFLQDLCDRT YAVTLQRGAK 60 TMNSLHLKQC VRSCNAFDFL SDVVNKVPSL GGSDAYGDQK FSRRRKISDD GMTENDEERK 120 IPKMEVRDLN IAYRGRGRGR GRGRGRPSGR TAEKIINNNK YEDDVSMSPE HDQSVNESYD 180 MERHNSDAQN NDTRLPEKTS SIRPIASSSS APPPPSAPPT ELENLMGDWA YPESSGIGIE 240 SRNLVNLTVT IDQEDEDYDN ED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-22	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	144	RGRGRGRGRG
2	135	145	RGRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008782237.1	3e-69	dr1-associated corepressor homolog isoform X1
TrEMBL	A0A0K9NRT0	0.0	A0A0K9NRT0_ZOSMR; Uncharacterized protein
STRING	XP_008782237.1	1e-68	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	2e-52	NF-YC family protein

Link Out ? help Back to Top
Phytozome	Zosma68g00680.1