PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma64g00330.1
Common NameZOSMA_64G00330
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 462aa    MW: 50698.7 Da    PI: 6.4954
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma64g00330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.5e-12116140327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C++f+rtGtCkyG++Ck++H++
  Zosma64g00330.1 116 QPDCQHFLRTGTCKYGSTCKYNHPK 140
                      789********************96 PP
2zf-CCCH31.72.7e-10163184627
                      -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                      C++++rt +Ck+G  CkF+H++
  Zosma64g00330.1 163 CPYYMRTRYCKFGIDCKFSHPQ 184
                      ********************97 PP
3zf-CCCH33.95.2e-11288313227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C+++ ++G CkyG++Ck++H++
  Zosma64g00330.1 288 DQPDCQYYIKNGSCKYGSSCKYHHPR 313
                      6899********************96 PP
4zf-CCCH28.42.9e-09334358226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      +++ C f+  +GtCkyG  CkF H+
  Zosma64g00330.1 334 GQAMCTFYNTYGTCKYGLGCKFDHP 358
                      7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.291113141IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-6113140IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9116140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6118141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4119139IPR000571Zinc finger, CCCH-type
SMARTSM003560.0054157184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.464157185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5160185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4161183IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-8163184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.117286314IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4286313IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-8288313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6288315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-5292313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.225332360IPR000571Zinc finger, CCCH-type
SMARTSM003560.0094332359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5334360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4337357IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-6338358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MLKLDPMHSS SQIQDAKANL ASLPTVSIEN LQEDSITNIK IDKDINGNSE NHEAGAIEEH  60
SQIHHNHSSS TDTTVEVVPI QDGNRSSVTI PDCTYFLKHG EPYFSKSNDL PERIGQPDCQ  120
HFLRTGTCKY GSTCKYNHPK NRFSGDISFN IDGLPIRKGE RFCPYYMRTR YCKFGIDCKF  180
SHPQPYSHGS LFSKSGVSSV YPPIVSSMTS PPGMSLIGGG IPSWPPTRPF WVSPGSWMPM  240
LLPCGQQDWN SYTDTVGPVT PSTGMVMSSP LSNNSITTTQ VIFPERPDQP DCQYYIKNGS  300
CKYGSSCKYH HPRDRITSSA ACTIGPLGLP LRPGQAMCTF YNTYGTCKYG LGCKFDHPVM  360
NYYNYTDPSI IFPNYQRNSP VICTPPDSTM SKSLKLTTDE GGDVTTKSKI TITTTIATVD  420
SNDANLLSEE TSVAVTPQSS LQSSSSALEN LLEANDQSSI D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020265527.14e-91zinc finger CCCH domain-containing protein 33-like isoform X1
TrEMBLA0A0K9NUT40.0A0A0K9NUT4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.13e-67zinc finger protein 1