PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma63g00360.1
Common NameZOSMA_63G00360
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 417aa    MW: 47876.4 Da    PI: 7.787
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma63g00360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.27.9e-10124145526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+++++tG C y ++C+F+H+
  Zosma63g00360.1 124 DCPYYMKTGNCGYNATCRFNHP 145
                      5********************8 PP
2zf-CCCH22.42.2e-07172193425
                      ---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                      ++C++++ +  CkyG+ CkF+H
  Zosma63g00360.1 172 VECKYYQSSAGCKYGSLCKFSH 193
                      68******************** PP
3zf-CCCH33.28.5e-11305327426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C++++rtG+C+y ++CkF+H+
  Zosma63g00360.1 305 KECPHYMRTGFCRYSAKCKFHHP 327
                      78********************8 PP
4zf-CCCH36.49e-12386410226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++++ +G+CkyG++CkF H+
  Zosma63g00360.1 386 GRVICKYYSSNGICKYGSTCKFDHP 410
                      799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.803119147IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-5119146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5120149IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7124145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4125147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.192168196IPR000571Zinc finger, CCCH-type
SMARTSM003560.0091169195IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5172193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4174194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5174199IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.596213241IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723301329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6301329IPR000571Zinc finger, CCCH-type
SMARTSM003560.0059302328IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8304327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4307326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812384412IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5385411IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-10386410IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6387412IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-6389409IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDVENPPKLG LKILSSSSDP RSTSSEEDLE ILYAKFCHHF KLRNEGKESS ETAVSGNGSG  60
VYEYQPSQID EDLELALKEF REDIENEEKL MKWRDEEWGD YDEVHDTSEI VQETYYPTRP  120
NALDCPYYMK TGNCGYNATC RFNHPSDKRK MELENTMEDK ELVAYDKFTP KVECKYYQSS  180
AGCKYGSLCK FSHQKVQTGS EVIEMNPMGF PVRHSEKECQ HYKCAGSCKF LEKNRSHHPN  240
PAKGENGHRS DAPYIGYAPR SQSLKRSAQW NEYQNYHSSD SNHQSTGSEL FELNFMGLPV  300
RHGKKECPHY MRTGFCRYSA KCKFHHPNPT KEAYIRGTPR PQNLQLSSTQ GRKYQARVAD  360
TLPPYIRGTP RPQNLQLSST QGKYQGRVIC KYYSSNGICK YGSTCKFDHP TSTMFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NT150.0A0A0K9NT15_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.12e-39C3H family protein