PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma5g02450.1

Common Name

ZOSMA_5G02450

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 470aa MW: 51137.1 Da PI: 6.2466

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma5g02450.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.4e-09	319	366	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Zosma5g02450.1 319 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 366 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.13E-11	313	370	No hit	No description
SuperFamily	SSF47459	4.58E-17	313	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	315	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-17	315	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-6	319	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	321	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MENDSFFANS GHLQSVSEIN CAPSSQQLLQ PCFLNLNWDL SMDQRSQFGS DLGSMVSSPS 60 THTSPANVAL RENVVLGEFV GKMRSICSSD EISPQSHLFL GSGCGGGGGN NCNTTTTTLN 120 SSPKLNLSIH NNQPISGNPS MPPTNHLSPF AMDPGFTERV ARFSSFNEEN YGGSQMGVSD 180 ISIQDRSQLS IKTLSEFGSG TTNDGQFGCG VDDPLIISGN RGKSRKFKGP LRGKTKDTPL 240 SSSIRKSTPK VVATGENFNM KRTKSSESTE TIKDDLKPKV EFTSSTNSGD GDQKPTTQPE 300 PPKQDFIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVTG KAVMLDEIIN 360 YVQSLQRQVE FMSMKLATVN PRLDFNIENL PHKDVPQLGL SCETTSCPVF PFTPQNFHFQ 420 SILTSGIENS STMPSFDGVF GTDFPSQVGG AFWDDDLQTV VQMGFTPNQ*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MENDSFFANS GHLQSVSEIN CAPSSQQLLQ PCFLNLNWDL SMDQRSQFGS DLGSMVSSPS  60
THTSPANVAL RENVVLGEFV GKMRSICSSD EISPQSHLFL GSGCGGGGGN NCNTTTTTLN  120
SSPKLNLSIH NNQPISGNPS MPPTNHLSPF AMDPGFTERV ARFSSFNEEN YGGSQMGVSD  180
ISIQDRSQLS IKTLSEFGSG TTNDGQFGCG VDDPLIISGN RGKSRKFKGP LRGKTKDTPL  240
SSSIRKSTPK VVATGENFNM KRTKSSESTE TIKDDLKPKV EFTSSTNSGD GDQKPTTQPE  300
PPKQDFIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVTG KAVMLDEIIN  360
YVQSLQRQVE FMSMKLATVN PRLDFNIENL PHKDVPQLGL SCETTSCPVF PFTPQNFHFQ  420
SILTSGIENS STMPSFDGVF GTDFPSQVGG AFWDDDLQTV VQMGFTPNQ*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029117287.1	1e-115	transcription factor bHLH62
TrEMBL	A0A0K9NUR7	0.0	A0A0K9NUR7_ZOSMR; BHLH transcription factor
STRING	XP_008809649.1	1e-104	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	2e-57	bHLH family protein

Link Out ? help Back to Top
Phytozome	Zosma5g02450.1