PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma5g01100.1
Common NameZOSMA_5G01100
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family SBP
Protein Properties Length: 824aa    MW: 93676.7 Da    PI: 7.2522
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma5g01100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP112.23.1e-35169242275
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 
                     Cqv++C+ad++++k yhrrh+vC  +++a++v+++g+ +r+CqqC++fh l++fDe+krsCrr+L++hn+rrr+
  Zosma5g01100.1 169 CQVPDCQADINDLKGYHRRHRVCLRCANAKSVVLDGEPKRYCQQCGKFHILKDFDEGKRSCRRKLERHNKRRRR 242
                     *************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.0E-27165230IPR004333Transcription factor, SBP-box
PROSITE profilePS5114128.795166243IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.98E-32167244IPR004333Transcription factor, SBP-box
PfamPF031106.8E-27169242IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MDEDCQEPST PVGSRVSEID PSSFLLNPDD SWDWGTYLDM HIPVEYDQQR KQNDYETHMQ  60
PFFPWETSPL PSTRQSLLPS PQPLTAATEV QTKLSVPLET GSGSDKSKVR KRDPRLVCEN  120
YLAGRIPCAC PEMDKKIEEE AATVKVLDET GTANVRKKAR MSAGGIAKCQ VPDCQADIND  180
LKGYHRRHRV CLRCANAKSV VLDGEPKRYC QQCGKFHILK DFDEGKRSCR RKLERHNKRR  240
RRGPNADQKA LDEKENNSIE IIHIEEVVQD DEQSKESLNE TQTSNGSDSL CLSNKSVDNT  300
LVESRGQDSD LNIRTVHSNS ISSFAVSSGP QREKTDNPSV SPPPLSLLSE NKNITYSTVC  360
PTGRMSFKLY DWNPADFPRR LRRQIFQWLD SMPVELEGYI RPGCTILTIF ISMPHLMWNK  420
LSNDTVRYLH DFVKKPESLF FRRGNVHIHF NNTLFQILQD GTSLVNVKME VQVPKLHYVY  480
PVLFEAGKSM EIFACGSNLF QPNFRFLISF GGKYLEHELD KMEDGVKGDL SCNSGHQMLR  540
LRIPQTDKKH FGPAFIEVEN KSGLSNFMTI LFAEKEIYLE LQTMQQPQCN LMNPNIISKI  600
KNEDGIQSLC EAFVSRSSSS MSDLLLDIGW FLKKPQFDDI KLFFSIGNAQ RLDCLIRYLV  660
QNESTTTLKK ITSHLETMLN YLNGNEFVDQ VASSQVNAVD VKSIQNCMDD ANKFLHKIIL  720
HSPIQEQSDT KDGVLIHQVN TEDVIQASDR ERMPLLGRKS RALLTGNKWP LDIYKSITNT  780
RFAIFIMVGV VTCCGLCMAV LHPHKATEFA MSVRRCVFRT QNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A7e-43164244181squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229241RRKLERHNKRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NWA80.0A0A0K9NWA8_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-160squamosa promoter binding protein-like 7