PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma58g00240.1
Common NameZOSMA_58G00240
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family SBP
Protein Properties Length: 337aa    MW: 38324.1 Da    PI: 8.9904
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma58g00240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.31.7e-41151228178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqve+C++dls ak+yhrrhkvCe+hska+vv+++gl+qrfCqqCsrfh lsefDe krsCr+rLa+hn+rrrk++a
  Zosma58g00240.1 151 RCQVEECKVDLSGAKHYHRRHKVCEFHSKATVVVANGLHQRFCQQCSRFHVLSEFDEMKRSCRKRLADHNRRRRKPSA 228
                      6**************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-33146213IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.573149226IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-39150230IPR004333Transcription factor, SBP-box
PfamPF031101.5E-31152225IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MNGRGFISIS FTKTLISASV TFISIHPMDN QKQSQQPQLW DWDNFNYNTQ NNNNSVVNPT  60
NADNQVWDFQ TSLLPAITTN FPLYLPVSAD SNHQHLDPNG FIKVEDGGPR EGKIGLNLGH  120
RTYFSSQDSL AIDRLFRRSR GLYQLSQHVP RCQVEECKVD LSGAKHYHRR HKVCEFHSKA  180
TVVVANGLHQ RFCQQCSRFH VLSEFDEMKR SCRKRLADHN RRRRKPSAQT APIKEHQTNQ  240
ICCSMCKSPS FIFELVSHQS HIYIHTNIIF LFRLHGCAEA TVITNSASTG DSYMNISSPA  300
AAYFHHQQQQ HQNRKFFING VASGVGSTSD FPMDLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-291522251184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208225KRSCRKRLADHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408055.16e-69PREDICTED: squamosa promoter-binding-like protein 10 isoform X1
RefseqXP_010913682.11e-68squamosa promoter-binding-like protein 10
RefseqXP_010913683.11e-68squamosa promoter-binding-like protein 10
RefseqXP_018684488.15e-69PREDICTED: squamosa promoter-binding-like protein 10 isoform X2
TrEMBLA0A0K9NUX30.0A0A0K9NUX3_ZOSMR; Uncharacterized protein
STRINGGSMUA_Achr7P05010_0013e-69(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-51squamosa promoter binding protein-like 8