PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma56g00700.1 | ||||||||
Common Name | ZOSMA_56G00700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | C3H | ||||||||
Protein Properties | Length: 441aa MW: 49177.2 Da PI: 5.7901 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.7 | 1.1e-09 | 61 | 85 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+++ r+G+Ck+G +CkF+H+ Zosma56g00700.1 61 GEQDCNYYIRSGFCKFGMTCKFNHP 85 6789********************9 PP | |||||||
2 | zf-CCCH | 39.2 | 1.2e-12 | 107 | 131 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Zosma56g00700.1 107 QPECQYYLKTGTCKFGATCKFHHPK 131 799********************96 PP | |||||||
3 | zf-CCCH | 39.1 | 1.2e-12 | 153 | 177 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Zosma56g00700.1 153 EPECTYYLRTGECKFGNTCKFHHPQ 177 799********************97 PP | |||||||
4 | zf-CCCH | 40.2 | 5.8e-13 | 280 | 306 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f+++tG CkyG++CkF+H++ Zosma56g00700.1 280 PGEPECVFYMKTGDCKYGATCKFHHPR 306 5789*********************96 PP | |||||||
5 | zf-CCCH | 31 | 4.2e-10 | 327 | 352 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++lC f+ r+G+Ck+G++CkF H++ Zosma56g00700.1 327 GEPLCIFYCRYGICKFGPNCKFDHPM 352 689*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0012 | 59 | 86 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.563 | 59 | 87 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-6 | 61 | 85 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 62 | 87 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-4 | 65 | 85 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-6 | 104 | 131 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.14 | 104 | 132 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-10 | 107 | 131 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 108 | 133 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.5E-5 | 110 | 130 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.732 | 150 | 178 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 150 | 177 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-6 | 152 | 177 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-10 | 153 | 177 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 156 | 176 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.699 | 279 | 307 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-6 | 279 | 306 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 281 | 306 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 284 | 309 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 285 | 307 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.854 | 325 | 353 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 325 | 352 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-7 | 327 | 352 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 329 | 354 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MEEGRMTAST AMVYDHDGSM DVMDGGSYSF YPRIVDEDAM WEMNMKAQET MEAGLYPERP 60 GEQDCNYYIR SGFCKFGMTC KFNHPVNRKL AVLAARMKGG YPERIGQPEC QYYLKTGTCK 120 FGATCKFHHP KDKAGIAGRA QLNNMGYPIR PNEPECTYYL RTGECKFGNT CKFHHPQPFN 180 SMVSFNSSSI YPAAHSSTTP DQQSYTGATD WPIARTSYIP SPSWQAPSNY TQMILPQGMM 240 QVPGWNSYPG QFGSFSSPEN NQQQTVGNDQ SRDGIFPERP GEPECVFYMK TGDCKYGATC 300 KFHHPRERLY SLPDCDLNPI GLPLRSGEPL CIFYCRYGIC KFGPNCKFDH PMNTTSMYDL 360 ASPTSIDVPV TLHNKLSPPS RATVLPPSSE GDVEDGNDKL QQLSNQELLE SEKMGSADDD 420 KIEAVVSQGK TGQEQISSFP * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010929825.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 1e-169 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A0K9NVQ1 | 0.0 | A0A0K9NVQ1_ZOSMR; Zinc finger CCCH domain-containing protein ZFN-like | ||||
STRING | XP_008812314.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-144 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Zosma56g00700.1 |