PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma54g00840.1
Common NameZOSMA_54G00840
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 297aa    MW: 32808.2 Da    PI: 4.1818
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma54g00840.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.6e-2081135357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      k++++t+eq++ Le+ Fe + ++  e++ eL+kklgL+ rqV vWFqNrRa++k+
  Zosma54g00840.1  81 KKRRLTPEQVHMLETSFETEIKLEPERKMELSKKLGLQPRQVAVWFQNRRARWKN 135
                      5678*************************************************95 PP
2HD-ZIP_I/II121.15.4e-3980168189
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      ekkrrl+ eqv++LE+sFe+e kLeperK+el+++LglqprqvavWFqnrRAR+k+kqlE+++ +Lk+ yd+l+++++ L +++++L +
  Zosma54g00840.1  80 EKKRRLTPEQVHMLETSFETEIKLEPERKMELSKKLGLQPRQVAVWFQNRRARWKNKQLETEFCQLKSLYDTLRANHDCLLQNNDSLLA 168
                      69***************************************************************************999999998864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-2074138IPR009057Homeodomain-like
PROSITE profilePS5007116.87676136IPR001356Homeobox domain
SMARTSM003893.5E-1979140IPR001356Homeobox domain
CDDcd000867.97E-1981137No hitNo description
PfamPF000465.0E-1781135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-2082140IPR009057Homeodomain-like
PRINTSPR000311.0E-5107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000311.0E-5116132IPR000047Helix-turn-helix motif
PfamPF021831.4E-7136168IPR003106Leucine zipper, homeobox-associated
PfamPF021833.7E-10149185IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDSSRFGFEY SASGPDNGNV FFVGRSAVLG FPDVGGGTSL STEDVSSGVG GSKRRTSIFS  60
SSEELIYGDD LYYDEQLLPE KKRRLTPEQV HMLETSFETE IKLEPERKME LSKKLGLQPR  120
QVAVWFQNRR ARWKNKQLET EFCQLKSLYD TLRANHDCLL QNNDSLLADN HRLRSEVISL  180
TGKLQEIKNS SGTSEVLDGV NGAVTLVSPL PESTDVDLDG APLVMESTDL YYTEVVEDGS  240
FSFHGAGCQF TVTCEDYDGS DDGGVYFPGA FSENPGADEL LEKDAESDII DWSVWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128136RRARWKNKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NYV10.0A0A0K9NYV1_ZOSMR; Homeobox-leucine zipper protein HAT5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-48homeobox 1