PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma54g00550.1
Common NameZOSMA_54G00550
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family TCP
Protein Properties Length: 415aa    MW: 45325.3 Da    PI: 7.8618
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma54g00550.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1142e-35611832133
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa 95 
                       g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a +ai +l+ ++   ++++       +++    g ++ +  
  Zosma54g00550.1  61 SGGKDRHSKVFTAKGLRDRRVRLSVSTAIQFYDLQDRLGVDQPSKAVEWLIKAAAAAIEDLPALDVRFQEQF-------MVG---DGGSMVDRI 144
                      689*************************************************************54444222.......222...235566666 PP

              TCP  96 kskksqksaasalnlak.esrakarararertrekmrik 133
                       +k++ +++++al+l++ e r kar ra+ert++++ +k
  Zosma54g00550.1 145 LTKSNASENSKALSLSRsEIRVKARDRAKERTAKEKEKK 183
                      6777777777779999999***********999887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.0E-3162193IPR005333Transcription factor, TCP
PROSITE profilePS5136931.32263121IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.029162180IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEIDEELQRT KRSRNNACWS YETPPMTAAA EEVEVEGEVL RMRAANWHQH SSRICRISRA  60
SGGKDRHSKV FTAKGLRDRR VRLSVSTAIQ FYDLQDRLGV DQPSKAVEWL IKAAAAAIED  120
LPALDVRFQE QFMVGDGGSM VDRILTKSNA SENSKALSLS RSEIRVKARD RAKERTAKEK  180
EKKDGDGISI HHQHHDHNSQ TSFTELLTGT GTAAHTNEFV TLAHPGGCGT AGLFHNHIRN  240
NSPVSATADY FSHPNLFQQG QKPHPHSQGL PSQNHFGNIS SSVVSMPFNA VSAAGDHMEM  300
QQQFSFLQDH LIPVAAVAAG GGEYSLNFSI SSGLAGFNRG TLQSNSQSTV PHHHHLQRIS  360
SPVDGSNLSF FLTAPTTSAP ATLDHSFSQG YDSRLQLCYG DGYQNTDLKG KGKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2468122155Putative transcription factor PCF6
5zkt_B3e-2468122155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00639PBMTransfer from Lj6g3v1946420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784856.11e-124transcription factor PCF6-like
TrEMBLA0A0K9NWJ20.0A0A0K9NWJ2_ZOSMR; TCP transcription factor 24
STRINGXP_008784856.11e-123(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-53TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2