PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1946420.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 415aa    MW: 45207.4 Da    PI: 7.8657
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1946420.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.92e-39411742133
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 
                       g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk+++WL+++a+ ai el+++++  ++   +++++++++ n++ ++ +ksa
  Lj6g3v1946420.1  41 SGGKDRHSKVMTSKGLRDRRVRLSVSTAIQFYDLQDRLGVDQPSKAVDWLIKAAEDAISELPSLNNLFPETPqQQSDHENQNLNQNLNSLSKSA 134
                      689*************************************************************444332222233333333344444444444 PP

              TCP  95 akskksqksaasalnlak.esrakarararertrekmrik 133
                       +s++++++ +  l+l++ e r kar+rarer ++++ ++
  Lj6g3v1946420.1 135 CSSNSETSKGSGGLSLSRcENRVKARERARERAAKEKENE 174
                      4777777777778******************877776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.4E-3742173IPR005333Transcription factor, TCP
PROSITE profilePS5136931.73243101IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.766153171IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEEDEIQEQV SKFPRIENGT TFQSSSWHNN SSRIVRVSRA SGGKDRHSKV MTSKGLRDRR  60
VRLSVSTAIQ FYDLQDRLGV DQPSKAVDWL IKAAEDAISE LPSLNNLFPE TPQQQSDHEN  120
QNLNQNLNSL SKSACSSNSE TSKGSGGLSL SRCENRVKAR ERARERAAKE KENESSIAHN  180
VNNNHHHMSQ TASFTELLTG GIGSTVTVPT TTASPTGSVH QTHGGHHQWS STVTPMDYFS  240
SGLLMGHSSS RTHQSSSSSS SSPGFSGQIQ LGHSLPVSPF SGENHSDQMQ RFSFMPEHLM  300
VTSSSCSTQP SGISDYNLNF TISPGLAAGY NRGTLQSNSP SLLPHHHHLQ RFSSSQVDGS  360
SSNNNLPFFM GGAAAAPSTM ENHHHLQFSP LFDGRLQLCY GDGSRNSDQK GKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2248102155Putative transcription factor PCF6
5zkt_B1e-2248102155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.104690.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During flower development, first observed throughout the floral meristem. Later expressed in rapidly growing floral primordia. Detected to a lower extent in vegetative primordia. During flower development, first observed throughout the floral meristem. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:10363373, ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00639PBM25215497Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1946420.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097710.0AP009771.1 Lotus japonicus genomic DNA, clone: LjT20A21, TM1936, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518471.11e-163transcription factor TCP2
RefseqXP_014518472.11e-163transcription factor TCP2
RefseqXP_014518473.11e-163transcription factor TCP2
RefseqXP_022642907.11e-163transcription factor TCP2
RefseqXP_022642908.11e-163transcription factor TCP2
SwissprotQ93V433e-87TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A1S3VJD91e-161A0A1S3VJD9_VIGRR; transcription factor TCP2
STRINGXP_007147929.11e-149(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-56TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]